BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327414
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04800.1 | Symbols: ATMSRB3, MSRB3 | methionine sulfoxide re... 691 0.0
AT4G04810.1 | Symbols: ATMSRB4, MSRB4 | methionine sulfoxide re... 595 2e-169
AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide re... 490 9e-138
AT4G21860.1 | Symbols: MSRB2 | methionine sulfoxide reductase B... 292 3e-78
> AT4G04800.1 | Symbols: ATMSRB3, MSRB3 | methionine sulfoxide
reductase B3 | chr4:2439546-2441205 FORWARD LENGTH=827
Length=827
Score = 691 bits (374), Expect = 0.0
Identities = 396/407 (97%), Gaps = 0/407 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCTCCGGGATCGGTTCAGAAAGGAGATGAAGAGTGGCGTGCGATTCTTTCACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATGGCGGCTCCGGGATCGGTTCAGAAAGGAGATGAAGAGTGGCGTGCGATTCTTTCACCT 208
Query 61 GAACAGTTTAGGATTCTTCGTCAAAAGGGCACTGAATATCCAGGAACAGGAGAATATGTC 120
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 209 GAACAGTTTCGGATTCTTCGTCAAAAGGGCACTGAATATCCAGGAACAGGGGAATATGTC 268
Query 121 AACTTCGACAAAGAAGGAATTTACGGTTGTGGAGGATGTAATGCTCCTCTTTATAAATCC 180
||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct 269 AACTTCGACAAGGAAGGAGTTTACGGTTGTGTAGGATGCAATGCTCCTCTTTATAAATCC 328
Query 181 ACCACAAAGTTCAACGCTGGTTGTGGCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ACCACAAAGTTCAACGCTGGTTGTGGCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCC 388
Query 241 ATTACCCGAATGTCAGACCCAGATGGGAGAAGAACAGAGATCAACTGTGCAACATGTGGT 300
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 389 ATTACCCGAACGACAGACCCAGATGGGAGAAGAATAGAGATCAACTGTGCAACATGTGGT 448
Query 301 GGACATCTTGGTCATGTTTTCAAAGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GGACATCTTGGTCATGTTTTCAAAGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCAT 508
Query 361 TGCGTGAACAGCGTTTCACTTAAGTTCACACCCGCAACGTCTTCCTT 407
||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 509 TGCGTGAACAGCGTTTCGCTTAAGTTCACACCCGCAGCGTCTTCCTT 555
> AT4G04810.1 | Symbols: ATMSRB4, MSRB4 | methionine sulfoxide
reductase B4 | chr4:2441327-2442567 FORWARD LENGTH=505
Length=505
Score = 595 bits (322), Expect = 2e-169
Identities = 363/383 (95%), Gaps = 2/383 (1%)
Strand=Plus/Plus
Query 447 GGAGTGGCGTGCAGTTCTTTCTCCTGAGCAGTTTCGGATTCTCCGTCAAAAGGGCACTGA 506
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 GGAGTGGCGTGCAGTTCTTTCTCCTGAACAGTTTCGGATTCTCCGTCAAAAGGGCACTGA 183
Query 507 AACGCCGGGAACTGGAGTATATGACAAGTTCTTCGAGGAAGGAATCTTCAGCTGCGTCGG 566
|||||||||||| | || ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 184 AACGCCGGGAACAGAAGAATATGACAAGTTCTTTGAGGAAGGAATCTTCAGCTGCATCGG 243
Query 567 ATGCAAAACTCCTCTTTATAAATCCACTACAAAGTTTGATGCCGGATGTGGCTGGCCAGC 626
||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 244 ATGCAAAACTCCTCTTTATAAATCCACCACGAAGTTTGACGCCGGATGCGGCTGGCCAGC 303
Query 627 TTTCTTTGAAGGACTTCCCGGTGCCATTAACCGAACCCCTGATCCAGATGGGAGAAGAAC 686
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 304 TTTCTTTGAAGGACTCCCCGGTGCCATTAACCGAGCCCCTGATCCAGATGGGAGAAGAAC 363
Query 687 TGAGATCACTTGTGCCGTGTGCGATGGGCATTTAGGCCATGTTCATAAAGGAGAAGGTTA 746
|||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 364 TGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATGTTCATAAAGGTGAAGGTTA 423
Query 747 T-GCTACTCCAACCGATGAACGCCATTGTGTTAACAGCGTTTCGATCAATTTTAACCCGG 805
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 TAG-TACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGATCAATTTTAACCCGG 482
Query 806 CCAAACCTTCCTCTGTAACCTGA 828
|||||||||||||| ||||||||
Sbjct 483 CCAAACCTTCCTCTATAACCTGA 505
> AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide
reductase B5 | chr4:2445859-2447086 FORWARD LENGTH=677
Length=677
Score = 490 bits (265), Expect = 9e-138
Identities = 346/385 (90%), Gaps = 6/385 (2%)
Strand=Plus/Plus
Query 447 GGAGTGGCGTGCAGTTCTTTCTCCTGAGCAGTTTCGGATTCTCCGTCAAAAGGGCACTGA 506
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 82 GGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTCGTCAAAAAGGCACTGA 141
Query 507 AACGCCGGGAACTGGAGTATATGACAAGTTCTTCGAGGAAGGAATCTTCAG-CTGCGTCG 565
|| ||| |||||||||| |||||||||||| |||||||||||||||||| | ||||| |
Sbjct 142 AAAGCCAGGAACTGGAGAATATGACAAGTTTTTCGAGGAAGGAATCTTC-GATTGCGTAG 200
Query 566 GATGCAAAACTCCTCTTTATAAATCCACTACAAAGTTTGATGCCGGATGTGGCTGGCCAG 625
||||||| ||||||||||||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 201 GATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGGCTGGCCAG 260
Query 626 CTTTCTTTGAAGGACTTCCC-GGTGCCATTAACCGAACCCCTGATCCAGATGGGAGAAGA 684
||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 261 CTTTCTTTGAAGGAC-TCCCTGGTGCCATAAACCGAACCCCTGATCCAGATGGGAGAAGA 319
Query 685 ACTGAGATCACTTGTGCCGTGTGCGATGGGCATTTAGGCCATGTTCAT-AAAGGAGAAGG 743
||||||||||||||||| | ||||||||| ||||||||||||||| | |||||||||||
Sbjct 320 ACTGAGATCACTTGTGCTGCGTGCGATGGACATTTAGGCCATGTTT-TCAAAGGAGAAGG 378
Query 744 TTATGCTACTCCAACCGATGAACGCCATTGTGTTAACAGCGTTTCGATCAATTTTAACCC 803
||| | || ||||||||||||||| ||||| |||||||| |||||||||| |||||||||
Sbjct 379 TTACGGTAATCCAACCGATGAACGTCATTGCGTTAACAGTGTTTCGATCAGTTTTAACCC 438
Query 804 GGCCAAACCTTCCTCTGTAACCTGA 828
||| ||| |||||||| ||| ||||
Sbjct 439 GGCAAAATCTTCCTCTATAATCTGA 463
> AT4G21860.1 | Symbols: MSRB2 | methionine sulfoxide reductase
B 2 | chr4:11600005-11601577 REVERSE LENGTH=912
Length=912
Score = 292 bits (158), Expect = 3e-78
Identities = 302/369 (82%), Gaps = 20/369 (5%)
Strand=Plus/Plus
Query 34 GAAGAGTGGCGTGCGATTCTTTCACCTGAACAGTTTAGGATTCTTC-GTCA-AAAGGGCA 91
||||||||||||||||||||||| |||||||| |||||||||| || | || ||| ||||
Sbjct 302 GAAGAGTGGCGTGCGATTCTTTCTCCTGAACAATTTAGGATTC-TCAGACAGAAA-GGCA 359
Query 92 CTGAATATCCAGGAACAGGAGAATATGTC-AA--CTTCGACAAAGAAGGAATTTACGGTT 148
|||||||||||||||| |||||||| | || |||||| || || || || |||
Sbjct 360 CTGAATATCCAGGAACTGGAGAATACAACAAAGTATTCGAC---GATGGCATCTATTGTT 416
Query 149 GTGGAGGATGT--AATGCTCCTCTTTATAAATCCACCA-CAAAGTTCAACGCTGGTTGTG 205
||| ||||||| || ||||||| || |||||||||| |||| ||| || |||||||||
Sbjct 417 GTGCAGGATGTGGAA--CTCCTCTCTACAAATCCACCACCAAA-TTCGACTCTGGTTGTG 473
Query 206 GCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCCATTACCCGAATGTCAGACCCAGATG 265
||||||||||||||||||| ||| ||||||| || || ||||||| | || |||||||
Sbjct 474 GCTGGCCAGCTTTCTTTGATGGACTCCCCGGAGCTATAACCCGAACCCCTGATCCAGATG 533
Query 266 GGAGAAGAA-CAGAGATCA-ACTGTGCAACATGTGGTGGACATCTTGGTCATGTTTTCAA 323
||||| ||| | ||||||| | ||||| | ||||| |||||||||||||| ||||| ||
Sbjct 534 GGAGACGAATC-GAGATCACA-TGTGCTGCTTGTGGAGGACATCTTGGTCACGTTTTTAA 591
Query 324 AGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCATTGCGTGAACAGCGTTTCACTTAA 383
||||||||||||| ||||||| |||||||| || || || || ||||| | || || ||
Sbjct 592 AGGAGAAGGTTTCCCTACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAA 651
Query 384 GTTCACACC 392
|||||||||
Sbjct 652 GTTCACACC 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5