BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327420
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12000.1 | Symbols: | S-locus related protein SLR1, putativ... 283 3e-75
AT1G47460.1 | Symbols: | pseudogene, putative S-locus-specific... 159 5e-38
> AT3G12000.1 | Symbols: | S-locus related protein SLR1, putative
(S1) | chr3:3818262-3819620 REVERSE LENGTH=1359
Length=1359
Score = 283 bits (153), Expect = 3e-75
Identities = 557/740 (75%), Gaps = 75/740 (10%)
Strand=Plus/Plus
Query 1 ATGAGAGGCGT-ACGAAAC-ATCTACCACCATTTTTACAC---CTT-TTC--CTTCTTCC 52
||||||||||| || | | | ||| |||||| |||||| ||| ||| |||||||
Sbjct 1 ATGAGAGGCGTAAC--ACCAAACTATTACCATTCTTACACTTTCTTCTTCTTCTTCTTCG 58
Query 53 TTGTC-T-TCA-CTCTCTTTCGTCCTGCATTTTCAATCCATGTCAATACTTTGTCACCTA 109
||||| | | | |||| |||| || || ||||| || | | || ||||||||| |||
Sbjct 59 TTGTCTTATTAGCTCTGTTTCTTCATG--TTTTC--TCGA--TAAACACTTTGTCATCTA 112
Query 110 CAGATTCTCTTACAATCTCAAGCAACCGAACCATTGTGTCTCCTGGTGATGTTTTCGAGC 169
|||| |||| |||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 113 CAGAAACTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCCCGGTAACATCTTCGAGC 172
Query 170 TTGGTTTCTTCAAA-C--C--CT--C-CTCGGA-TACTTCTCATTGGTATCTTGGGATAT 220
| |||||||||||| | | | | |||| | | | |||||||||||||||||| |
Sbjct 173 TAGGTTTCTTCAAAACTACAACAAGCTCTCGAAATGGTGATCATTGGTATCTTGGGATTT 232
Query 221 GGTACAAGAAAATCTCCGAGCGAACTTATGTATGGGTTGCTAATAGAGACAACCCTCTCT 280
|||||||| |||||| ||| ||||||||||||||||||| || ||||| |||||||| |
Sbjct 233 GGTACAAGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAACAGAGATAACCCTCT-T 291
Query 281 TG-A-GTTCCATTGGAACTTTCAAA-ATCTCCGACACTAACAACCTGGTTCTCCTCGATC 337
| | || | || ||||| || ||| ||||| || ||||| | | || || || ||||
Sbjct 292 TCCAAGT-CTATCGGAACATT-AAAGATCTCTTACGCTAAC--C-TCGTCCTTCTTGATC 346
Query 338 ACTCAA--ACAACATTGTTTGGTCGACGAATCTCACCACAAGAGACG-TGATATCTCCGG 394
| || || | |||||||||| |||||||| | || ||| ||| ||| |||||| |
Sbjct 347 ATTCTGGTACT-C-TTGTTTGGTCAACGAATCT-A--ACGAGA-ACGGTGAAATCTCCAG 400
Query 395 TGGTTGTCGTAGAGCTTCTCGATAATGGCAACTTGGTGATGAGATACTCCAACAA-CAAC 453
|||| | | |||||| |||||||| |||||||| ||| | ||| ||||||| | ||||
Sbjct 401 TGGTGG-C--AGAGCTGCTCGATAACGGCAACTTCGTGCTTAGAGACTCCAA-AGGCAAC 456
Query 454 AA-CAACGACCCAAGTGGGTTTCTGTGGCAGAG-TTTCGATTATCCGACAGATACTAT-A 510
| ||| ||| | | | | ||||||| || ||| ||||||||| || || || |
Sbjct 457 TATCAAA-ACCGA--T---TCT-TGTGGCAAAGCTTT-GATTATCCGGTGGACAC-ATTA 507
Query 511 CTTCCGGAAATGAAACTTGGTTTGGATCTTAATACTGGATTCAAC-AGA-TT-CCTAAGA 567
|| ||||| |||||| ||||| |||||| || || ||| || | ||| || ||| ||
Sbjct 508 CTCCCGGAGATGAAAATTGGTCGGGATCTCAAAACAGGA--CA-CGAGACTTTCCTCAGT 564
Query 568 TCTTGGAGAAGTACTGATGATCCGGCAAGTGGAGA-TTATTCGTACAAACTCGAAACTCA 626
||||||||||| || ||||||| |||| ||||| || | ||| |||||||| ||||||
Sbjct 565 TCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAGACTTCT-CGTTCAAACTCGGAACTCA 623
Query 627 AGGGGTTCCTGAGTTTTTTCTATGGAGTGAA-GACGTTCCAATAC-ACCGAACCGGTCCA 684
|||| | |||||||||| ||| | | ||| || ||| | || ||||| |||||||
Sbjct 624 AGGGCTACCTGAGTTTTATCTTTTCAA-GAAAGA-GTTTCTATTGTACCGATCCGGTCCG 681
Query 685 TGGAACGGAATCCGGTTTAG 704
||||| ||| || |||||||
Sbjct 682 TGGAATGGAGTCGGGTTTAG 701
> AT1G47460.1 | Symbols: | pseudogene, putative S-locus-specific
glyco protein SLR1 precursor, similar to S-locus-specific
glycoprotein SLR1 precursor GB:S20489 GI:99660 from (Arabidopsis
thaliana); blastp match of 55% identity and 1.4e-28 P-value
to GP|21321240|dbj|BAB97371.1||AB075423 S-locus-related
I {Lunaria annua} | chr1:17403894-17404298 FORWARD LENGTH=405
Length=405
Score = 159 bits (86), Expect = 5e-38
Identities = 184/229 (80%), Gaps = 15/229 (7%)
Strand=Plus/Plus
Query 92 TCAATACTTTGTCACCTACAGATTCTCTTACAATCTCAAGCAACCGAACCATTGTGTCTC 151
|||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 91 TCAATACTTTGTCATCTACAAAAACTCTAACAATCTCAAGCAACCGAACCATTGTGTCTC 150
Query 152 -CTGGTGATGTTTTCGAGCTTGGTTTCTTCAAA-C--C--CT--C-CTCGGA-TACTTCT 201
| ||| | || |||||||| |||||||||||| | | | | ||| | | | |
Sbjct 151 AC-GGTAACGTCTTCGAGCTAGGTTTCTTCAAAACTACAGCAAGCTCTCTAAATGGTGAT 209
Query 202 CATTGGTATCTTGGGATATGGTACAAGAAAATCTCCGAGCGAACTTATGTATGGGTTGCT 261
| |||||||| |||||| || |||||| |||||| ||| |||||||||||||||||||
Sbjct 210 CGTTGGTATCATGGGATTTGCTACAAGTCAATCTCTGAGAGAACTTATGTATGGGTTGCC 269
Query 262 AATAGAGACAACCCTCTCTTG-AGTTCCATTGGAACTTTCAAA-ATCTC 308
||||||||||| ||||| || | ||||||||||| || ||| |||||
Sbjct 270 AATAGAGACAATCCTCT-TTCCAAATCCATTGGAACATT-AAAGATCTC 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5