BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327423

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04900.1 | Symbols: RIC10 | ROP-interactive CRIB motif-conta...   728    0.0  


> AT4G04900.1 | Symbols: RIC10 | ROP-interactive CRIB motif-containing 
protein 10 | chr4:2486218-2487779 REVERSE LENGTH=471
Length=471

 Score =  728 bits (394),  Expect = 0.0
 Identities = 446/471 (95%), Gaps = 3/471 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAGTGAAAATGAAGGGCATCTATAAAGGCTTCAAATGTATCTCTCAAATATTTGCC  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAATGAAAATGAAGGGCATCTATAAAGGCTTCAAATGTATCTCTCAAATATTTGCC  60

Query  61   GTTGAGAAAGAGAGAGATGAAATAGAAATTGGGTTTCCAACAGACGTAAAACATGTTGCT  120
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  61   GTTGAGAAAGAGAGAGATGAAATAGAAATTGGGTTTCCAACAGATGTAAAACATGTGGCT  120

Query  121  CATATTGGCTGGGAGGGTTCCTCTGGGAGTGCTCCTGGTTGGATGAGTGAGTTTAAGGTC  180
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  121  CATATTGGCTGGGAGGGTTCATCTGGTAGTGCTCCTGGTTGGATGAGTGAGTTTAAGGTC  180

Query  181  GGAGCTGAGGTTCTATCACCGAGACCATCATCTTTCAGTAATGCAAGACCTTCTACTTCT  240
            || |||||| || |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGGGCTGAGCTTTTATCTCCAAGACCATCATCTTTCAGTAATGCAAGACCTTCTACTTCT  240

Query  241  TTTTTCACTTCTTCTTC--C-ACTGATTTTGATCAAGGATCGAGTCAACGAACAATATCA  297
            || ||||||||||||||  | ||||||||||||||||||||||||||||||  |||||||
Sbjct  241  TTCTTCACTTCTTCTTCTTCCACTGATTTTGATCAAGGATCGAGTCAACGAGGAATATCA  300

Query  298  GATACACTAAGAGATATACCTCCAGTAACTCCGATAAATCTACCAAAAAATAACAAGAAG  357
            ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct  301  GATACACTACGAGATATACCTCCAGTTACTCCGATAAATTTACCGAAAAATAACAAGAAG  360

Query  358  AAAAGTAGTAGAAGAAAGAAGTCTTCTTCATCATCATCATCTCCAAAATCGTCAAGATCA  417
            ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  361  AAAAGCAGTAGAAGAAAGAAATCTTCTTCATCATCATCATCTCCAAAATCTTCAAGATCA  420

Query  418  TCTATATTATCCAAATCTTCGTATAAATCAACTGTATCACGACTAATCTAG  468
            ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  421  TCTGTATTATCCAAATCTTCGTATAAATCAACTGTATCACGATTAATCTAG  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5