BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327448
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05210.1 | Symbols: | Trimeric LpxA-like enzymes superfamil... 974 0.0
AT4G21220.1 | Symbols: | Trimeric LpxA-like enzymes superfamil... 612 2e-174
> AT4G05210.1 | Symbols: | Trimeric LpxA-like enzymes superfamily
protein | chr4:2682867-2684899 FORWARD LENGTH=1025
Length=1025
Score = 974 bits (527), Expect = 0.0
Identities = 617/660 (93%), Gaps = 7/660 (1%)
Strand=Plus/Plus
Query 152 GAT-TATTAGAGACAAGTAGTGGAGGTAATGTTGACAAAGGGTTTCTAAGATGGCGAAAT 210
||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 196 GATCTATTAGAGACAAGTAGTGGAGGTAATGTTGAGAAAGGTTTTCTAAGATGGCGAAAC 255
Query 211 GGAGGAGGAATGTACCATAGCTCGGCCGC-AATTGATTCCTCGGCTCTGGTTGAGTTTGG 269
|||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct 256 GGAGGAGGAATGTACCATCGTTCGGCC-CTAATTGATTCCTCGGCTCTGGTTGAGTTTGG 314
Query 270 AGCAGTGGTTCA-CGAGAAAGCTATATTGGGTCCAGAGGTTTGTATAGGATCTAACACTG 328
|||||||||||| | || ||||||||||||| |||||||| ||||||||| |||||||
Sbjct 315 AGCAGTGGTTCACCAAG-AAGCTATATTGGGAGCAGAGGTTCATATAGGATCCAACACTG 373
Query 329 TAGTTGGACCATCAGTCGAGATCGGTTCTTCTACAAAGATCGGCAATTGTAGTATTGGTG 388
|| ||||| |||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct 374 TAATTGGATCATCAGTCAAAATTGGCCCTTCTACAAAGATCGGCAATTGTAGTATTGGTG 433
Query 389 ATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTTTACGTGG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTTTACGTGG 493
Query 449 ATGAACA-CGGAAACATGGTGAAGAAGCCCCAAACTTTAAATGTGAAGATAGGGAATCGT 507
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 494 ATGA-CAACGGAAACATGGTGAAGAAGCCTCAAACTTTAAATGTGAAGATAGGGAATCGT 552
Query 508 GTAGAAATCGGAGCAAATACATGCATTGACCGGGGCAGCTGGAGAGATACCGTGATCGGG 567
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 553 GTGGAAATCGGAGCAAACACATGCATTGATCGGGGCAGCTGGAGAGATACCGTGATCGGG 612
Query 568 GATGACACTAAGATAGACAATTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAGTGT 627
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 613 GATGATACTAAGATAGACAACTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAATGT 672
Query 628 TGCTTGCTCTGTGGCCAAGTAGGCATAGCTGGATCAGCAGAGATTGGTGACTATGTAACA 687
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 673 TGCTTGTTCTGTGGCCAAGTAGGCATAGCTGGATCAGCAGAGATTGGTGACTTTGTAGCA 732
Query 688 TTAGGAGGACGGGTTGCTGTTCGAGACCATGTCTCCATTGTATCTAAGGTTCGACTTGCT 747
|||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 733 CTAGGAGGACGAGTAGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCT 792
Query 748 GCTAATAGTTGTGTTACTAAAAACATTACCGAACCAGGGGATTTTGGCGGCTTTCCTGCT 807
||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 793 GCTAATAGTTGTGTTACTAAAAACATTACGGAACCAGGGGATTACGGCGGTTTTCCTGCT 852
> AT4G21220.1 | Symbols: | Trimeric LpxA-like enzymes superfamily
protein | chr4:11316828-11319067 REVERSE LENGTH=1065
Length=1065
Score = 612 bits (331), Expect = 2e-174
Identities = 550/651 (84%), Gaps = 34/651 (5%)
Strand=Plus/Plus
Query 188 AAGGGTTTCTAAGATGGCG-AAATGGAGGA-GGA-ATGTACCATAGCTCGGCCGC-AATT 243
|||| ||||| |||||| | |||||||||| ||| |||| |||||||||| | | ||||
Sbjct 212 AAGGATTTCTTAGATGG-GAAAATGGAGGAGGGACATGT--CATAGCTCGG-CTCAAATT 267
Query 244 GATTCCTCGGCTCTGGTTGAGTTTGGAGCAGTGGTTCACGAGAAAGCTATATTGGGTCCA 303
||||||||||| ||||||||||||| ||||||||||| || ||||| | || ||| ||
Sbjct 268 TATTCCTCGGCTTTGGTTGAGTTTGGTGCAGTGGTTCATGAAAAAGCGGTCTTAGGTGCA 327
Query 304 GAGGTTTGTATAGGATCTAACACTGTAG-TTGGACCATCAGTCGAGATCGGTTCTT---C 359
|||||| | |||||||| ||||| | ||||||||||||| || || ||| ||| |
Sbjct 328 GAGGTTCATGTAGGATCTGGTACTGT-GATTGGACCATCAGTTGACATTGGTCCTTCCAC 386
Query 360 -----T---ACA-AA-G-----ATCGGCAATTGTAGTATTGGTGATT-TATGTGTCATCC 403
| | | || | ||| |||| |||||||||||||||| | ||||| ||||
Sbjct 387 AAGAATCGGATATAATGTTTCAATCAGCAACTGTAGTATTGGTGATTCT-TGTGTTATCC 445
Query 404 ATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTT-TACGTGGATGAACACGGAAAC 462
| |||||||||||||| ||||||||||| ||| ||||| ||||| |||||||| ||||||
Sbjct 446 ACAATGGAGTCTGCATAGGTCAAGATGGCTTT-GGTTTCTACGTTGATGAACATGGAAAC 504
Query 463 ATGGTGAAGAAGCCCCAAACTTTAAATGTGAAGATAGGGAATCGTGTAGAAATCGGAGCA 522
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 505 ATGGTGAAGAAGCCTCAAACTTTAAACGTAAAGATAGGGAATCGTGTCGAAATCGGAGCA 564
Query 523 AATACATGCATTGACCGGGGCAGCTGGAGAGATACCGTGATCGGGGATGACACTAAGATA 582
||||| |||||||| || |||||||||||||| || ||||||| ||||| |||||||||
Sbjct 565 AATACTTGCATTGATCGAGGCAGCTGGAGAGAAACAGTGATCGAAGATGATACTAAGATA 624
Query 583 GACAATTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAGTGTTGCTTGCTCTGTGGC 642
||||||||||| |||||||| ||||||||||| || || |||||||||||||| |||||
Sbjct 625 GACAATTTAGTGCAGATAGGCCACAATGTGATCATAGGAAAGTGTTGCTTGCTTTGTGGT 684
Query 643 CAAGTAGGCATAGCTGGATCAGCAGA-GATTGGTGACTATGTAACATTAGGAGGACGGGT 701
||||||||||| ||||| |||| | | ||||||||||||||| | ||||||||||| |
Sbjct 685 CAAGTAGGCATCGCTGGTTCAGTA-ACGATTGGTGACTATGTGGCTTTAGGAGGACGAGC 743
Query 702 TGCTGTTCGAGACCATGTCTCCATTGTATCTAAGGTTCGACTTGCTGCTAATAGTTGTGT 761
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 744 TGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCAGCTAATAGTTGTGT 803
Query 762 TACTAAAAACATTACCGAACCAGGGGATTTTGGCGGCTTTCCTGCTGAACC 812
||||| |||||| || |||||||| |||||||| ||||||||||||| |||
Sbjct 804 TACTAGAAACATCACTGAACCAGGAGATTTTGGAGGCTTTCCTGCTGTACC 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5