BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327454
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 | chr4:27387... 918 0.0
AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10806... 472 4e-132
> AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 | chr4:2738715-2740655
REVERSE LENGTH=1433
Length=1433
Score = 918 bits (497), Expect = 0.0
Identities = 554/581 (95%), Gaps = 5/581 (1%)
Strand=Plus/Plus
Query 493 GAAAAGAAGATCCTT-C----CTGGTGTATGCAGCAACTTCTTGTGCAATGCCAAACCCG 547
||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 729 GAAAAGAAGATCCTTCCAAAGCTGGTGTATGCAGTAACTTCTTGTGCAATGCCAAACCCG 788
Query 548 GCGATAAAGTTAAAATCACTGGTCCATCTGGAAAGGTAATGCTTTTACCTGAAGATGACC 607
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GCGATAAAGTTAAAATCACCGGTCCATCTGGAAAGGTAATGCTTTTACCTGAAGATGACC 848
Query 608 CAAAAGCTACTCACATAATGATTGCTACTGGAACCGGAGTTGCTCCATACAGAGGATACC 667
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 849 CGAAAGCTACTCACATAATGATTGCTACTGGAACCGGAGTTGCTCCGTACAGAGGATACC 908
Query 668 TACGGCGTATGTTTATGGAGAACGTTCCAAATTTCAAGTTTGATGGACTCGCATGGCTCT 727
|||||||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||
Sbjct 909 TACGGCGTATGTTTATGGAGAATGTTCCCAATTTCAAGTTTGACGGACTTGCTTGGCTCT 968
Query 728 TCCTCGGTGTGGCTAACTCAGACAGTCTTCTCTATGATGAAGAATTTGCCGGTTACCTCA 787
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 969 TCCTTGGTGTGGCTAACTCAGACAGTCTTCTCTATGATGAAGAATTTGCCGGGTACCGCA 1028
Query 788 AGGACTATCCAGAGAATTTCAAGTACGACAAAGCGCTGAGCAGAGAAGAGAAGAACAAGA 847
||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1029 AGGACTATCCAGAAAATTTCAGGTACGACAAAGCGCTGAGCAGAGAAGAGAAAAACAAGA 1088
Query 848 AAGGAGGGAAAATGTATGTGCAGGACAAGATTGAAGAATACAGTGACGAGATCTTCAAAC 907
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1089 AAGGAGGGAAAATGTATGTGCAGGACAAGATTGAAGAATACAGCGATGAAATCTTCAAAC 1148
Query 908 TTCTGGACAATGGAGCTCATATTTACTTTTGCGGGCTTAAAGGAATGATGCCCGGGATTC 967
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1149 TTCTGGACAATGGAGCTCATATTTACTTTTGCGGACTTAAAGGAATGATGCCCGGGATTC 1208
Query 968 AAGACACTCTTAAGAGGGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGCAGAAACTTACTC 1027
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AAGATACGCTTAAGAGAGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGCAGAAACTTACTC 1268
Query 1028 AGCTCAGGAAGAACAAGCAGTGGCATGTTGAAGTGTATTGA 1068
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AGCTCAGGAAGAACAAGCAGTGGCATGTTGAAGTGTATTGA 1309
Score = 719 bits (389), Expect = 0.0
Identities = 461/496 (93%), Gaps = 3/496 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATTGCACTTCCAACTGGAATTGATGGGTCGAGCCGATCTATGATTAAGGTGCAG 60
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 200 ATGTCCGTTGCACTTCCAACTAGAATTGATGGGTCGAGCCGATCTATGATTAAGGTTCAA 259
Query 61 AGTATAAGTTTCACTGAGAAGTCATGGAG---TCCTCTGCTGAGACTAGATTCAAAATCT 117
|||||||| |||||||| ||||||||| | ||||||||||||||||||||| ||||||
Sbjct 260 AGTATAAGCTTCACTGATAAGTCATGGGGTCCTCCTCTGCTGAGACTAGATTCGAAATCT 319
Query 118 AGAAGCTTAAGTGTGAATAAACGGTCGACAATATGTATGTCACTTCAGCAAGCAAGCAGA 177
||||||||| ||||||| ||| |||| |||||||| ||||||||||||||| |||||| |
Sbjct 320 AGAAGCTTAGGTGTGAAAAAAAGGTCCACAATATGCATGTCACTTCAGCAATCAAGCAAA 379
Query 178 TCCAAAGTAGCGGTTACTCCTCTAGAACTTGAAGATCCCAAAGAGACTCCGTTAAACTTG 237
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 TCCAAAGTCTTGGTTACTCCTCTAGAACTTGAAGATCCCAAAGAGACTCCCTTAAACTTG 439
Query 238 TACAGGCCTAAGGAGCCTTATACGGCAACGATTGTTTCGGTTGAGAGAATTGTTGGTCCA 297
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 440 TTTAGGCCTAAGGAGCCTTATACTGCAACTATTGTTTCGGTTGAGAGAATTGTTGGTCCA 499
Query 298 CAAGCACCTGGAGAGACTTGCCACATTGTAATTGATCATGATGGTAATGTTCCATACTGG 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 500 CAAGCACCTGGAGAGACTTGCCACATTGTTATTGATCATGATGGTAATGTTCCTTACTGG 559
Query 358 GAAGGACAAAGCTATGGAGTGATTCCTCCTGGCGAGAATCCTAAGAAACCTGGTGCTCCT 417
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct 560 GAAGGACAAAGCTATGGAGTCATTCCTCCTGGTGAGAATCCCAAGAAACCTGGTGCACCT 619
Query 418 CATAACGTTCGCCTTTATTCGATTGCATCAACACGATATGGAGATTCTTTCGATGGCAAA 477
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 620 CATAACGTTCGCCTTTATTCGATTGCATCAACACGGTATGGAGATTCTTTTGATGGCAAA 679
Query 478 ACAGCTAGTCTATGTG 493
||||||||||||||||
Sbjct 680 ACAGCTAGTCTATGTG 695
> AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10806985-10809180
REVERSE LENGTH=1510
Length=1510
Score = 472 bits (255), Expect = 4e-132
Identities = 467/566 (83%), Gaps = 28/566 (5%)
Strand=Plus/Plus
Query 517 TGCAGCAACTT-CT-TGTGCAATGCCAAA-CCCGGCGATAAAG-TTAAAATCACTGGTCC 572
||||||||||| || |||| || |||| ||||| || ||| || ||||||| |||||
Sbjct 794 TGCAGCAACTTCCTATGTG--AT-TCAAAGCCCGGTGA-CAAGATTCAAATCACCGGTCC 849
Query 573 ATCTGGAAAGGTAATGCTTTTACCTGAAGA-TGACCCAAAAGCTACTCACATAATGATTG 631
|||||| ||||||||||| ||||| | ||| ||| ||||| || || ||||||||||| |
Sbjct 850 ATCTGGGAAGGTAATGCTATTACCCG-AGAGTGATCCAAACGCGACACACATAATGATAG 908
Query 632 CTACTGGAACCGGAGTTGCTCCATACAGAGGATACCTACGGCGTATGTTTATGGAGAACG 691
| || ||||| ||||| |||||||||||||| ||| |||| || ||||| ||||| ||||
Sbjct 909 CCACGGGAACAGGAGTGGCTCCATACAGAGGCTACTTACGTCGAATGTTCATGGAAAACG 968
Query 692 TTCCAAATTTCAAG---TTTGATG-GAC-TCGCATGGCTCTTCCTCGGTGTGGCTAACTC 746
| ||||| |||| ||| | | | | | || ||||||||| | || ||||| ||| |
Sbjct 969 TCCCAAA---CAAGACATTT-A-GCGGCTTAGCTTGGCTCTTCTTAGGCGTGGCCAACAC 1023
Query 747 AGACAGTCTTCTCTATGATGAAGAATTTGCC-GGTTACCTCAAGGACTATCCAGAGAA-T 804
|| || ||||||||||| ||||| ||| || | ||||| || ||| ||||||| || |
Sbjct 1024 CGATAGCCTTCTCTATGACGAAGAGTTTACCAAG-TACCTAAAAGACCATCCAGACAACT 1082
Query 805 TTCAAGTACGACAAAGCGCTGAGCAGAGAAGAGAAGAACAAGAAAGGAGGGAAA-ATGTA 863
|| | || |||||| || |||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1083 TT-AGGTTCGACAAGGCATTGAGCAGAGAGGAGAAGAACAAGAAAGG-TGGAAAGATGTA 1140
Query 864 TGTGCAGGACAAGATTGAAGAATACAGTGACGAGATCTTCAAACTTCTGGACAATGGAGC 923
||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 1141 CGTGCAGGACAAGATTGAAGAATATAGTGATGAGATCTTCAAGCTTTTGGACAATGGAGC 1200
Query 924 TCATATTTACTTTTGCGGGCTTAAAGGAATGATGCCCGGGATTCAAGACACTCTTAAGAG 983
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1201 TCATATTTACTTCTGTGGGCTTAAAGGAATGATGCCTGGGATTCAAGATACACTTAAGAG 1260
Query 984 GGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGC-AGAAACTTACTCAGCTCAGGAAGAACA 1042
|| || |||||| |||| || |||||||| | ||| ||| ||||||||||||||||||
Sbjct 1261 AGTTGCAGAAGAGAGAGGTGAGAGCTGGGA-CTTGAAGCTTTCTCAGCTCAGGAAGAACA 1319
Query 1043 AGCAGTGGCATGTTGAAGTGTATTGA 1068
|||||||||| |||||||| ||||||
Sbjct 1320 AGCAGTGGCACGTTGAAGTCTATTGA 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5