BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327458

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05430.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   627    3e-179


> AT4G05430.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr4:2753582-2754420 FORWARD LENGTH=528
Length=528

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 404/435 (93%), Gaps = 6/435 (1%)
 Strand=Plus/Plus

Query  1    ATGACGATCAGACCAGAGTCACTGGTGGGGCCACAAGGGAACACGACGTTCTTGGAGGGA  60
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGATCAGACCAGAGTCACTAGTAGGGCCACAAGGGAACACGACGTTCTTGGAGGGA  60

Query  61   ACAACATGGTGCGTGGCTCGACCAGGTGCGACTCAAGCTGAGCTACAGAGAGCCCTTGAT  120
            |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct  61   ACAACATGGTGCGTGGCTAGACCAGGTGCGACACAAGCTGAGCTACAAAGAGCTCTTGAT  120

Query  121  TGGGCATGTGGGATTGGGAGAGTGGATTGCTCGGTCATTGAGAGACATGGTGATTGTTAC  180
            |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct  121  TGGGCATGTGGGATTGGGAGGGTAGATTGCTCAGTCATTGAGAGACATGGTGATTGTTAC  180

Query  181  GAACCAGACACGATCGTGTCGCACGCATCTTTTGCGTTTAATGCGTATTACCAAACCAAT  240
            ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct  181  GAACCGGACACGATCGTATCGCATGCATCTTTTGCGTTTAATGCATATTACCAAACCAAT  240

Query  241  GGGAACAATCGCATTGCTTGTTACTTTGGTGGAACAGCTACACTCACCAAGATTAACCCT  300
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  241  GGGAACAATCGCATTGCTTGTTACTTCGGTGGAACAGCTACATTCACCAAGATTAACCCT  300

Query  301  AGCTACGGAAAATGCTCCTATGATGTATCCAAGTCGGAAGTCTCCGCCGCAAGATCTCTA  360
            ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||
Sbjct  301  AGCTACGGAAAATGCTCCTATGATGCATCCAAATCGGAAGTCTCCACCGCAAGATCTTTA  360

Query  361  TCGAAATGTA-AAC-CTCGGTGCTTCCTGCTGATGTACATAGGACTTTTGTT-TCTTATT  417
            || | | ||| ||  ||||||| || |||||||||||||||||| |||| || |||||||
Sbjct  361  TC-AGA-GTACAAAGCTCGGTGGTTGCTGCTGATGTACATAGGAGTTTT-TTCTCTTATT  417

Query  418  AGTCGGCGAGGCTAA  432
            |||||||||| ||||
Sbjct  418  AGTCGGCGAGACTAA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5