BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327467
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03590.1 | Symbols: | Cystatin/monellin superfamily protein... 590 7e-168
AT4G03570.1 | Symbols: | Cystatin/monellin superfamily protein... 316 1e-85
> AT4G03590.1 | Symbols: | Cystatin/monellin superfamily protein
| chr4:1600780-1602950 REVERSE LENGTH=741
Length=741
Score = 590 bits (319), Expect = 7e-168
Identities = 518/609 (85%), Gaps = 33/609 (5%)
Strand=Plus/Plus
Query 52 TTTGATATGTTAATGGCGCCTGAATGGGATGTGGATAGCTTCGAAGAAG-AGACGACGAT 110
||||||||||||||||||||||||||||||||| |||||||||||| || | |||| |||
Sbjct 145 TTTGATATGTTAATGGCGCCTGAATGGGATGTGCATAGCTTCGAAG-AGAAAACGATGAT 203
Query 111 AGAAGATTCCATGGAAGCATCTTCTTCAGTGGTTGTCAGTTCGTGCCTGACAAAGCGTAA 170
| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 204 AAAAGATTCCATGGAAGCATCTTCTTCAGTGGTGGTTAGTTCGTGCCTGAAAAAGCGTAA 263
Query 171 GGCTGAGTTCGACCCGGAAGAGGAGGAGGAGGAAGAGAGCGATGGTGAG--A-TTGAA-G 226
|| ||||||||||| |||||| |||||||| ||| |||||||| | ||| |
Sbjct 264 AGCCGAGTTCGACCC------GGAGGATGAGGAAGAAAGCAATGGTGAGAAAGAAGAAGG 317
Query 227 -A---A-GGGAAAGCCAAAGTTGAGGAGCGTAAGGCTGGAGGA-ATAGATTACTTAAAGG 280
| | |||||||||||| ||||||||| ||||||| | | || ||||||| ||||
Sbjct 318 CAGTGATGGGAAAGCCAAAATTGAGGAGCCTAAGGCTAAAACAGAT-TATTACTTTAAGG 376
Query 281 TGCCTGAATGGGATGTGGACAGCTTCGATG-GTTTAGAGCCCTTTGATCATTACAGAGGG 339
|||| ||||||||||||||||| ||||||| | ||| |||| ||||||||||| | ||
Sbjct 377 TGCCAGAATGGGATGTGGACAGTTTCGATGCGCTTA-AGCCAACTGATCATTACA-AAGG 434
Query 340 A-TAAAACCAATGGGCTTGGAGTGGGAAGCGCTTA-CGG-AT-AAAGACTTTCGCGCGTA 395
| | | ||||||| ||||||||||||||| ||| || || ||| ||||||||| |||
Sbjct 435 ATTTAGACCAATGAATTTGGAGTGGGAAGCGATTAGGGGTATAAAAAACTTTCGCGAGTA 494
Query 396 CTGGGAAGAGATGGTCTATGTTTGTCTCCAAAAACTCAA-CAAGGACAA-G---GATTCG 450
| |||||||||||||||||| ||||||||||||||| || ||| ||||| | |||| |
Sbjct 495 CAGGGAAGAGATGGTCTATG-TTGTCTCCAAAAACTTAACCAA-GACAAGGTTTGATTTG 552
Query 451 AATGTGGAGTTGGTTGAAGTTGTGAGAGGTTATTATCGCGCAGGAGCGAGAGCCAAGTCA 510
|||||||||||||||||||||||||||||||||||||||| |||| | | | | ||||||
Sbjct 553 AATGTGGAGTTGGTTGAAGTTGTGAGAGGTTATTATCGCGGAGGACCTAAATCGAAGTCA 612
Query 511 TACATTACATTTATGGCGAGGGAGAAGCCAGATGGACCTCTTGTTGAGTATCAAGCCAAG 570
||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 613 TACATTACATTCATGGTAAGGAAGAAGCCAGATGGACCTCTTGGTGAGTATCAAGCCAAG 672
Query 571 TGTATGGTTACTTTAGACAGAAAGAGGCATCCCATCCTATGTAGACCGGCTCCTACACCA 630
|||||||| |||||| |||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 673 TGTATGGTCACTTTACACAGAAAGAGGCATCCCATCCTCTGTAGGCCGACTCCTACACCA 732
Query 631 AAGCCTTAA 639
||||| |||
Sbjct 733 AAGCCATAA 741
> AT4G03570.1 | Symbols: | Cystatin/monellin superfamily protein
| chr4:1590413-1594105 REVERSE LENGTH=1044
Length=1044
Score = 316 bits (171), Expect = 1e-85
Identities = 198/211 (94%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 367 GCGCTTACGGATAAAGACTTTCGCGCGTACTGGGAAGAGATGGTCTATGTTTGTCTCCAA 426
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 256 GCGCTTACTGATAAAGACTTTCGCGCATACTGGGAAGACATGGTCTATGTTTGTCTCCAA 315
Query 427 AAACTCAA-CAAGGACAAGGATTCGAATGTGGAGTTGGTTGAAGTTGTGAGAGGTTATTA 485
|||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 316 AAACTCAACCAA-GACAAGGAATCGAATGTGGAGTTGGTTGAAATTGTGAGAGGTTATTA 374
Query 486 TCGCGCAGGAGCGAGAGCCAAGTCATACATTACATTTATGGCGAGGGAGAAGCCAGATGG 545
|||||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 375 TCGCGCAGGACCGAGATCAAAGTCATACATTACATTTATGGCGAGGGAGAAACCGGATGG 434
Query 546 ACCTCTTGTTGAGTATCAAGCCAAGTGTATG 576
||||||||| |||||||||||||||||||||
Sbjct 435 ACCTCTTGTGGAGTATCAAGCCAAGTGTATG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5