BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327471

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03540.1 | Symbols:  | Uncharacterised protein family (UPF04...   787    0.0  


> AT4G03540.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr4:1570042-1571483 FORWARD LENGTH=495
Length=495

 Score =  787 bits (426),  Expect = 0.0
 Identities = 472/495 (95%), Gaps = 0/495 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAAGTTGACAAAGAGAATAGGAGGGCTTGTGCTGCGATTGGCAGCGTTTGGTGCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAGTTGACAAAGAGAATAGGAGGGCTTGTGCTGCGATTGGCAGCGTTTGGTGCG  60

Query  61   GCTCTTGCCGCCTTGATCGTTATGATCACTAGCCGCGAGAGAGCTTCCTTCTTCGCTGTC  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||
Sbjct  61   GCTCTTGCCGCATTGATCGTTATGATCACTAGCCGCGAGAGAGCTTCCTTCTTAGCCATC  120

Query  121  TCTCTTGAAGCTAAGTACACGGATATGGCCGCGTTTAAGTATTTTGTGATCGCAAATGCT  180
            || ||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||
Sbjct  121  TCCCTTGAAGCTAAGTACACCGATATGGCAGCGTTTAAGTATTTTGTAATAGCAAACGCT  180

Query  181  GTCGTGAGTGTTTATAGCTTTCTAGTTCTGTTTCTTCCAAAGGAGAGTTTGCTTTGGAAA  240
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTTGTGAGTGTTTACAGCTTTCTAGTTCTGTTTCTTCCAAAGGAGAGTTTGCTTTGGAAA  240

Query  241  TTCGTCGTCGTCTTGGATTTGGTAATGACCATGCTACTGACGTCAAGCTTATCGGCGGCT  300
            ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct  241  TTCGTCGTCGTCTTGGATTTGGTGATGACAATGCTGCTTACGTCAAGCTTATCGGCGGCT  300

Query  301  CTAGCGGTGGCACAAGTGGGAAAGAAGGGAAACGCAAACGCAGGTTGGCTTCCTATTTGC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  CTAGCGGTGGCACAAGTGGGAAAGAAGGGAAACGCAAACGCAGGTTGGCTTCCGATTTGC  360

Query  361  GGTCAAGTTCCAAAATTTTGCGATCAGATCACTGGAGCTTTAATTGCCGGTTTCGTTGCA  420
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGGCAAGTTCCAAAGTTTTGCGATCAGATCACTGGAGCTTTAATTGCCGGTTTCGTTGCA  420

Query  421  CTCGTCCTCTACGTACTCTTACTCTTATATTCTCTCCACTCCGTCGTTGACCCTTTTCTC  480
            ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct  421  CTCGTCCTCTATGTACTCTTACTCTTATATTCTCTCCACGCCGTCGTCGACCCTTTTCTC  480

Query  481  CTTCAGAAATCTTGA  495
            ||||| |||||||||
Sbjct  481  CTTCAAAAATCTTGA  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5