BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327489
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03220.1 | Symbols: | Protein with RNI-like/FBD-like domain... 2241 0.0
> AT4G03220.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr4:1417472-1419148 FORWARD LENGTH=1497
Length=1497
Score = 2241 bits (1213), Expect = 0.0
Identities = 1422/1520 (94%), Gaps = 25/1520 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACAAGATCTGTGAAACGgaagaagaagaagaagaaagaagaagaagCAAATTGG 60
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACAAGATCTGTGAAAC-G--GAAGAAGAAGAAGAAAGAAGAAGAAGCAAA---- 53
Query 61 TTTAGTGTAGAGGAGATTATCAAAGTAGATAGAATCAGTAACCTCCCTGATTCTCTTATT 120
|| | || |||||| ||||||||||||||| ||||||||||||||||| | |
Sbjct 54 -TT-G-GT--------TTATCAGAGTAGATAGAATCAGCAACCTCCCTGATTCTCTAAAT 102
Query 121 CATCAGATTCTTCTCTTACTTCCTCTTAAATCTGCAGCTCAAACGAGCTTACTTTCGAAA 180
||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 103 CATCAGATTCTTCTCTTGCTTCCTCTTAAATCTGCAGCACAAGCTAGCTTACTTTCGAAA 162
Query 181 AGATGGAGATCTCTTTTTCTCTCATTGCCTGATCTTGATTTCACCTCCATTAACGACCTC 240
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 163 CGATGGAGATCTCTCTTTCTCTCATTGCCTGATCTTGATTTCACCTCCATCAACGATCTC 222
Query 241 AAGAATCCGAAATCTATCTCTTCTAACTCCATTTACAAAGTGCTTTCTCTTCGTAATCAC 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 223 AAGAATCCGAAATCTTTCTCTTCTAACTCCATTTACAAAGTGCTTTCTCTTCGTAGTCAT 282
Query 301 CGTGACTTCAACAATCTTAGATCACTTCGTTTTCGCGCTCCCATCACTTTCACGAGTCTC 360
||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 283 CGTGACTCCAACAATCTTAGATCACTTCGTTTTCGCGTTCCCGTCACTTTCACAAGTCTC 342
Query 361 AATTCCTTGATTCGTTTAGCTGTTACTCATGAGGTTCAAGATCTTGACATTGAAGTTACT 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 343 AATTCCTTGATTCGTTTAGCTGTTACTCATCAGGTTCAAGATCTTGACATTGAAGTCACT 402
Query 421 ACAAAAGACTACTTTAACTTCCCTCGTTGGATTGTGACCTCTCAAGATTTAAGAGCTTTG 480
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 403 ACCAAAGACTACTTTAACTTCCCTCGTTGGATTGTGACCTCTCAAAATTTAAGAGCTCTG 462
Query 481 AAGCTTAGATCATCTC-ACCCTGGTTTTCGATTACCTCCTTCATCATCAATC-CTTGGAG 538
| ||||| |||| | | ||| ||||||||||||||||||||||||||| | | | ||||
Sbjct 463 ACGCTTAAATCAGC-CAACCTTGGTTTTCGATTACCTCCTTCATCATC-AGCACGAGGAG 520
Query 539 GTTTTCAAAAACTTACTTCACTCTCTTTATCTCTTGTGATCCTACACAATCATCAACCTT 598
|||| ||||| |||||||||||||||||||||| |||||| |||||| | |||||||||
Sbjct 521 GTTTCCAAAAGCTTACTTCACTCTCTTTATCTCGTGTGATACTACAC-A--ATCAACCTT 577
Query 599 GTCTCTCAGATTTCTTCACTGATCCAAGCTTTCCTCTTCTAGAGAAACTAAACCTAGAAA 658
|||| |||||||||||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct 578 GTCTGTCAGATTTCTTCACTGATCCGAGCTTCCCTCTTCTGGAGAAACTAACCCTAGAAT 637
Query 659 GTTGCTTTGGACTCAAGGAACTTAAGGTTAGTTGCCGTCTTCTCCAAGAGTTTTCTCTAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GTTGCTTTGGACTCAAGGAACTTAAGGTTAGTTGCCGTCTTCTCCAAGAGTTTTCTCTAA 697
Query 719 AGAACTCTTTACAGCTTGAGGGCTTAGAGGTTTCTGGTAATAAACTTCAGAAACTTAAGG 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 698 AGAACTCTTTACAGCTTGAGGGCTTAGAGGTTTCTGGTAATAAGCTTCAGAAACTTAAGG 757
Query 779 TTGAGAGTTGTTTCCATTCATACTCAGAAAAGAGCTTTGTGAAGATTAACACACCGAATC 838
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTGAGAGTTGCTTCTATTCATACTCAGAAAAGAGCTTTGTGAAGATTAACACACCGAATC 817
Query 839 TCAGAACTTTCCTTTGGAATTCAAACGCAGTCACTACTAGTGTTCATTTCTTGGACAAGT 898
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 818 TCAAAACTTTCCTTTGGAATTCAAACGCTGTCACTACTAGTGTTCATTTCTTGGACAAGT 877
Query 899 TAGTTTGTCTGAGAAAAGCATTCGTTAAAGTGTTTTGGCTTCATCAAGATCTCAATTCTC 958
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 878 TAGTTTGTCTGAGAAAAGCATTTGTTAAAGTGTTTTGGCATCATCAAGATCTCAATTCTC 937
Query 959 AGACACAAAGCTTATTCACTCTCTTGTCAGGTCTCTCTAATTCCTATAAACTACAACTTG 1018
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 938 AGATACAAAGCTTATTCACTCTCTTGTCAGGTCTCTGTCATTCCTATAAACTACAACTTG 997
Query 1019 GAAACCAATCCGTAGAGATTTTGTCAAGCAAGAAGGGACTATTAAAGAATCATCTTCTAC 1078
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 998 GAAACCAATCCGTAGAGATTTTGTCGAGTAAGAAGGGACTATTAAAGAATCATCTTCTAC 1057
Query 1079 CGTTTCACAACATGAGATTCTTGGAACTGCAAACACGTTTCAGCAGACACAATGTTCAAA 1138
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1058 CGTTTCACAACATGAGATTCTTGGAACTGCAAACACGTTTGAATAGACACAATGTTCAAA 1117
Query 1139 CACTGTCCTGTCTGTTCAAGAGCTGTCCAATGCTAAACATACTTACCCTCAAAATCATTA 1198
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1118 CACTGTCATGTCTGTTCAAGAGCTGTCCAATGCTAAACATACTTACCGTCAAAATCATTG 1177
Query 1199 ATGATCAAACAAGTGAAAGAAGGCAATGGGATAAGGATTTGTGGAATATGTCAAACTCAG 1258
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1178 ATGATCAAACAAGTGAAAGAAGGCAATGGAATAAGGATTTGTGGGATATGTCAAACTCAG 1237
Query 1259 AGATTCAATACTGGGAATCTCAAACCTATGAATTGGAAGCTTTTTTGAACCACTTGGAAT 1318
||||||| ||||||||||||||| |||||||||| ||| |||| ||||||||||||||||
Sbjct 1238 AGATTCAGTACTGGGAATCTCAAGCCTATGAATTAGAATCTTTCTTGAACCACTTGGAAT 1297
Query 1319 TTGTGGAGATTCACGGATTCTTAGAGTGCGAGAACGAAATGAGCCTCGCAATCTTTTTGC 1378
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTGTGGAGATTCACGGATTCGTAGAGTGCGAGAACGAAATGAGCCTCGCAATCTTTTTGC 1357
Query 1379 TGAGACATGGAAAGGCTTTGATCAAGATGACTCTTCGGTCTAGTTTCCTCTGCAGAGACT 1438
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1358 TGAGACATGGAAAGGCTTTAATCAAGATGACGCTTCGGTCTAGTTTCCTCTGTAGAGACT 1417
Query 1439 CTCTCCGGAGACAAATGATAAGGTCACAGCTAACGGGATTCTCCATGGCTTCTTCCAAAG 1498
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTCTCCGCAGACAAATGATAAGGTCACAGCTAACGGGATTCTCCATGGCTTCTTCCAAAG 1477
Query 1499 CCAAAATCTCATTCCATTGA 1518
||||||||||||| ||||||
Sbjct 1478 CCAAAATCTCATTTCATTGA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5