BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327516

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF fami...   303    1e-81


> AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF family 
protein | chr4:1266463-1268612 REVERSE LENGTH=1036
Length=1036

 Score =  303 bits (164),  Expect = 1e-81
 Identities = 263/310 (85%), Gaps = 10/310 (3%)
 Strand=Plus/Plus

Query  327  GATCGAATTGAATTTACCTATGATCAGAAGATGTGAGTACAACTCCAATGATGTCTCCAT  386
            ||||||| ||||||| ||| |||| | ||  |||||||||| |||||| |||||||||||
Sbjct  433  GATCGAAATGAATTTCCCTGTGATTACAACTTGTGAGTACAGCTCCAAGGATGTCTCCAT  492

Query  387  GTTCTCCAAAGCCTTAAACGGATCTACCATTGTTGACG-TCAGAGGAACTACAACAGCTA  445
             ||||| |||||||| || ||| |||||||||| || | || ||| ||||| ||| | ||
Sbjct  493  CTTCTCTAAAGCCTTGAATGGAGCTACCATTGTCGATGTTC-GAGAAACTAAAACTGATA  551

Query  446  GCAC-CATCCCTGAAGCCTTGAAT-GGAG-TTGCCAAGGCAGCTTCAACCGACAAAATCA  502
            | || ||||  | || ||||| || |||| ||  |||  || ||||||| ||| ||||||
Sbjct  552  G-ACTCATCTTTAAACCCTTG-ATAGGAGCTT-TCAAAACAACTTCAACAGACCAAATCA  608

Query  503  TCGTTGTGCTTCCATATTGGGAATCTGTCATTGAATTGCAGCCAAGAGTGGGTGATATCA  562
            ||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||| 
Sbjct  609  TCGTTGTGCTTTCATCTTGGGAATCTGTCATTGAATTTCAGCCAAGAGTGGATGATATCG  668

Query  563  TGAAATG-CCTCGGCAAAGTGATGATTGTTACCGCTGCTGCTCCTCAAGGATCTCCATTT  621
            ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  669  TGAAATGCCCT-GGCAAAGTGATGATTGTTACCGCTGCTGCTCCTCAAGGATCTCCTTTT  727

Query  622  GATTTCTGCA  631
            || |||||||
Sbjct  728  GACTTCTGCA  737


 Score =  124 bits (67),  Expect = 1e-27
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  632  ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTCGAGCCTCAAGATGAACA  691
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  774  ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACA  833

Query  692  AGTCTGATTTCGT  704
            ||| |||||||||
Sbjct  834  AGTGTGATTTCGT  846



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38680293190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5