BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327540

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02620.1 | Symbols:  | vacuolar ATPase subunit F family prot...   660    0.0  


> AT4G02620.1 | Symbols:  | vacuolar ATPase subunit F family protein 
| chr4:1149248-1151346 REVERSE LENGTH=636
Length=636

 Score =  660 bits (357),  Expect = 0.0
 Identities = 377/387 (97%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGGGAGAGCTCCGATCCCTGCTCGCAACTCTGCCCTTATCGCAATGATCGCCGAT  60
            ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  79   ATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCCTCATCGCAATGATCGCCGAT  138

Query  61   GAGGACACTGTAGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAG  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  GAGGACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAG  198

Query  121  ACAAATTACCTCATCGTGGATTCAAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  ACAAATTACCTCATCGTGGATTCAAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG  258

Query  181  GAATTCTCAGCGAGGGATGATATCGCTATCATTCTTTTAAGCCAATACATTGCCAATATG  240
            ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  259  GAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATATCGCCAATATG  318

Query  241  ATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  ATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCC  378

Query  301  AAGGACCATCCCTATGATCCTGCTCATGATTCAGTTCTCTCCCGTGTCAAGTACCTCTTC  360
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  379  AAGGACCATCCCTATGATCCTGCTCATGATTCAGTTCTCTCTCGTGTCAAGTACCTCTTT  438

Query  361  TCTGCTGAGTCTGTGTCACAGCGTTAA  387
            ||||| || ||||||||||||||||||
Sbjct  439  TCTGCAGAATCTGTGTCACAGCGTTAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5