BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327556
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/R... 1175 0.0
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA... 756 0.0
> AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1068974-1072183 FORWARD LENGTH=1513
Length=1513
Score = 1175 bits (636), Expect = 0.0
Identities = 751/804 (93%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAGCCGTTCGAGTAGAACAATTTACGTCGGAAACCTTCCCGGCGATATTCGTGAA 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 49 ATGAGCAGCCGTTCGAGTAGAACGATTTACGTCGGGAACCTTCCCGGCGATATCCGTGAA 108
Query 61 AGAGAAGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAAATT 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 109 AGAGAAGTTGAAGACTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAGATT 168
Query 121 CCGCCGAGGCCTCCTGGCTATGCATTCGTCGAGTTTGAGGATGCTCGGGATGCTGATGAT 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 CCGCCGAGGCCTCCAGGCTATGCATTCGTCGAGTTTGAGGATGCTCGTGATGCTGATGAT 228
Query 181 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCGTTTACGGGTGGAACTAGCT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCATTTACGGGTGGAACTAGCT 288
Query 241 CATGGTGGGAGGCGTTCATCACATGATGCACGCGGCAGTTACAgtggtggtggtcgtggc 300
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 289 CATGGTGGGAGGCGTTCATCACATGATGCACGCGGTAGTTATAGTGGTCGTGGTCGTGGC 348
Query 301 ggtcgtgatggtgttgacggtggtggtcgtgggcgtggACCATCTAGGAGATCCGAGTAC 360
||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 349 GGTCGTGGTGGTGGTGACGGTGGTGGTCGTGAACGTGGACCATCTAGGAGATCAGAGTAC 408
Query 361 CGCGTTGTAGTGTCAGGTTTGCCGTCATCTGCGTCCTGGCAAGACCTCAAGGATCACATG 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 CGCGTTGTAGTGTCAGGTTTGCCTTCATCTGCGTCCTGGCAAGACCTCAAGGATCACATG 468
Query 421 CGTAAAGGAGGAGAAGTTTGTTTTTCGCAAGTGTTTCGTGATGGTAGAGGTACAACTGGA 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 469 CGTAAAGGAGGAGAAGTTTGTTTTTCTCAAGTGTTTCGTGATGGTAGAGGTACAACTGGA 528
Query 481 ATAGTAGATTATACCAGCTACGAGGACATGAAATATGCGATAAAAAAGCTCGACGACACA 540
|| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 529 ATTGTAGATTATACCAGCTACGAGGACATGAAATATGCG---------CTCGATGACACA 579
Query 541 GAGTTTCGGAATGCGTTTTCTCATGGATATGTTCGG---A-A---TATGATTCAAGGAGG 593
||||||||||||||||||||||||| |||||||||| | | |||||||||||||||
Sbjct 580 GAGTTTCGGAATGCGTTTTCTCATGAATATGTTCGGGTTAGAGAATATGATTCAAGGAGG 639
Query 594 GATTCGAGGAGCCCCAGCCGTGGAAGATCTTATTCTAAGAGCCGCAGCCGTAGTCGCAG- 652
||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||
Sbjct 640 GATTCGAGGAGCCCCAGCCGTGGAAGATCCTATTCTAAGAGCCGCAGCCGTGGACGGAGT 699
Query 653 CCGGGGGCGGAGCCCTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGGCTAA 712
|| | || || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CCCAGC-CGTAGTCGTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGGCTAA 758
Query 713 ATCTTCACGTAGATCACCTGCAAAATCTACATCGAGATCTCCTCACTCTCGCTCCCGCTC 772
||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 759 ATCTTTGCGTAGATCGCCTGCAAAATCTACATCGAGATCTCCTCGCTCTCGCTCCCGCTC 818
Query 773 TAAGTCGAGGTCACTGTCTCCACG 796
||||||||||||||||||||||||
Sbjct 819 TAAGTCGAGGTCACTGTCTCCACG 842
> AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding
(RRM/RBD/RNP motifs) family protein | chr1:626741-629819
FORWARD LENGTH=1241
Length=1241
Score = 756 bits (409), Expect = 0.0
Identities = 679/807 (84%), Gaps = 28/807 (3%)
Strand=Plus/Plus
Query 1 ATGAGCAGCCGTTCGAGTAGAACAATTTACGTCGGAAACCTTCCCGGCGATATTCGTGAA 60
|||||||| |||||||||||||| | ||||||||||||||||| |||||||| |||||
Sbjct 94 ATGAGCAGTCGTTCGAGTAGAACCGTGTACGTCGGAAACCTTCCTGGCGATATCCGTGAG 153
Query 61 AGAGAAGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAAATT 120
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 154 AGAGAGGTCGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTT 213
Query 121 CCGCCGAGGCCTCCTGGCTATGCATTCGTCGAGTTTGAGGATGCTCGGGATGCTGATGAT 180
|| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 214 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 273
Query 181 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCGTTT-ACGGGTGGAACTAGC 239
|| ||| |||| |||||||| ||||||||||||||||||||||| | |||||||| | ||
Sbjct 274 GCTATTCATGGTCGTGATGGCTATGACTTTGATGGGCATCGTTTGA-GGGTGGAATTGGC 332
Query 240 TCATGGTGGGAGGCGTTCATCACATGATGCACGCGGCAGTTACAgtggtggtggtcgtgg 299
||||||||||||||||||||| ||||| | || || |||| || ||||||||| |||||
Sbjct 333 GCATGGTGGGAGGCGTTCATCAGATGATACTCGGGGTAGTTTCAATGGTGGTGGCCGTGG 392
Query 300 cggtcgt-gatg--gtgttgacggtggtggtcgtgggcgtggACCATCTAGGAGATCCGA 356
||| || | | ||| ||| |||||| ||||||||| | |||||||||||| ||
Sbjct 393 TGGTGGTCGCGGCCGTGGTGATGGTGGTAGTCGTGGGC-----C-ATCTAGGAGATCAGA 446
Query 357 GTACCGCGTTGTAGTGTCAGGTTTGCCGTCATCTGCGTCCTGGCAAGACCTCAAGGATCA 416
|| || ||| |||| |||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 447 GTTTCGTGTTCTAGTCACAGGCTTGCCTTCATCTGCTTCTTGGCAAGATCTCAAGGATCA 506
Query 417 CATGCGTAAAGGAGGAGAAGTTTGTTTTTCGCAAGTGTTTCGTGATGGTAGAGGTACAAC 476
||||||||||||||| || || ||||| |||||||||| ||||||| |||||| |||||
Sbjct 507 CATGCGTAAAGGAGGCGATGTCTGTTTCTCGCAAGTGTACCGTGATGCTAGAGGGACAAC 566
Query 477 TGGAATAGTAGATTATACCAGCTACGAGGACATGAAATATGCGATAAAAAAGCTCGACGA 536
|||| | || ||||| ||| |||| ||||||||||| |||||| | ||||||||||||||
Sbjct 567 TGGAGTTGTTGATTACACCTGCTATGAGGACATGAAGTATGCGCTGAAAAAGCTCGACGA 626
Query 537 CACAGAGTTTCGGAATGCGTTTTCTCATGGATATGTTCGG---A-A---TATGATTCAAG 589
|||||||||||| ||||||||||| |||||||||| ||| | | |||||||||||
Sbjct 627 CACAGAGTTTCGAAATGCGTTTTCGAATGGATATGTCCGGGTTAGAGAATATGATTCAAG 686
Query 590 GAGGGATTCGAGGAGCCCCAGCCGTGGAAGATCTTATTCTAAGAGCCGCAGCCGTAGTCG 649
|| |||||| ||||| || ||||| |||||||| |||||||||||||||||||| || ||
Sbjct 687 GAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAAGAGCCGCAGCCGCAGCCG 746
Query 650 CAGCCGGGGGCG-GAGCCCTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGG 708
| || | || ||||| ||| | |||||||||||||||| |||||||||||| ||||
Sbjct 747 TGGACGAAG-CGTGAGCCGAAGCAGGAGCAGAAGCAGGAGCAGGAGCAGAAGTCCCAAGG 805
Query 709 CTAAA-TCTTCACGTAGATCACCTGCAAAATCTACATCGAGATCTCCTCACTCTCGCTCC 767
| ||| ||||||||||| || ||||||||||||||||| ||||||||| | | | | |
Sbjct 806 C-AAAGTCTTCACGTAGGTCCCCTGCAAAATCTACATCAAGATCTCCTGGC-C-C-C-C- 859
Query 768 CGCTCTAAGTCGAGGTCACTGTCTCCA 794
|||| ||||| ||||||| |||||||
Sbjct 860 -GCTCGAAGTCAAGGTCACCGTCTCCA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5