BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327563

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02380.1 | Symbols: SAG21, AtLEA5 | senescence-associated ge...   616    9e-176


> AT4G02380.1 | Symbols: SAG21, AtLEA5 | senescence-associated 
gene 21 | chr4:1046204-1046997 REVERSE LENGTH=694
Length=694

 Score =  616 bits (333),  Expect = 9e-176
 Identities = 429/471 (91%), Gaps = 24/471 (5%)
 Strand=Plus/Plus

Query  87   AAAG-CTTGAGAGAGAGAACACAGACGAAACCAACTTTCTTCAATCTCGTTGCCGCAG--  143
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  
Sbjct  24   AAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGTA  83

Query  144  TAATAATCTCATTCCTCGGGTAAATCTCTCCTTCTGCGGCGGCGACAAGaaaaaaaaaaa  203
            |||| |||||||||||||| || ||||||||||||||||||||||||||||   | || |
Sbjct  84   TAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGCGGCGACAAGAAGCTACAAGA  143

Query  204  aGTTTCAACCTTTTATTGTCTGTTTTCTCTC--TTCAAGAAACTACATACTTCGAAAATG  261
            |   | ||      |  ||||||||||||||  |||||||||| || |||||||||||||
Sbjct  144  A---T-AA------AAAGTCTGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAATG  193

Query  262  GCTCGTTCTTTCTCTAACGTCAAGGTCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAAT  321
            ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  194  GCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAAT  253

Query  322  GCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCTC-A---AG-G----GAGCGGTGGA  372
            ||||||||||||||||||||||||||||||||||| | |   || |    ||||||||||
Sbjct  254  GCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTTTCGAGCGGTGGA  313

Query  373  AGAAGTGGAGCTGCTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAG  432
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  AGAAGTGGAGCTGTTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAG  373

Query  433  AAGATTTCTTGGGTTCCAGATCCCAAAACCGGTTATTACAGACCCGAAACCGGTTCCAAC  492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  374  AAGATTTCTTGGGTTCCAGATCCCAAAACCGGTTATTACAGACCCGAAACCGGTTCCAAC  433

Query  493  GAGATTGACGCGGCTGAGCTACGAGCAGCTCTCTTGAACAACAAGCAGTGA  543
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  GAGATTGACGCGGCTGAGCTACGAGCAGCTCTCTTGAACAACAAGCAGTGA  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5