BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327582

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c...   643    0.0  


> AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | 
chr4:13753210-13754745 REVERSE LENGTH=1050
Length=1050

 Score =  643 bits (348),  Expect = 0.0
 Identities = 427/464 (92%), Gaps = 9/464 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCTCGATCCTGCTTTCGAATCTTGG  60
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  86   ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTCGAATCTTGG  145

Query  61   CTCCGAGATTCCAGCTACCTCGAGCTCCTCGATCACCGCACCTCTGCTGCAGCCGCCGCC  120
            || ||||||||| | ||||||||||||||||||||||||||||| || || || || |||
Sbjct  146  CTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCTGCAGCTGCC  205

Query  121  GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGTTGCCGCAACTTCTGCGGCGTCTGACGAT  180
            ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct  206  GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCATCTGACGAT  265

Query  181  GAA----CATCCATTACCGGTGGTTTCTTCGCTTCTCTTTTGTCTCGACGCGTCACTGTC  236
            |      ||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct  266  GTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTCGTCACTGTC  325

Query  237  TCTTCTCTTCTTACAATTAACCCTTTCTCCAAGCTCTCCG---ATGATTTTTCCGGAGAT  293
            |||||||||||||| |||||||||||||| ||||||||||   |||||||||||||||||
Sbjct  326  TCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTTTCCGGAGAT  385

Query  294  ACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTTCCAACGTCT  353
            ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||
Sbjct  386  ACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTCCCGTCGTCT  445

Query  354  TCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-ATCAAACGATTCGCTAGGAATTACAC  412
            ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
Sbjct  446  TCTCAGCAAGCGAGAATGAGAGTTCATGAG-AATATCAAACGATTCGCTAGGAATTACGC  504

Query  413  TACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAAATGC  456
            |||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct  505  TACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGC  548


 Score = 71.3 bits (38),  Expect = 9e-12
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  481  TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGAT  521
            ||||||||||||||||||||||||||||||||| |||||||
Sbjct  617  TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGAT  657



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5