BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg327582 Length=552 Score E Sequences producing significant alignments: (Bits) Value AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c... 643 0.0 > AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | chr4:13753210-13754745 REVERSE LENGTH=1050 Length=1050 Score = 643 bits (348), Expect = 0.0 Identities = 427/464 (92%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 1 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCTCGATCCTGCTTTCGAATCTTGG 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 86 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTCGAATCTTGG 145 Query 61 CTCCGAGATTCCAGCTACCTCGAGCTCCTCGATCACCGCACCTCTGCTGCAGCCGCCGCC 120 || ||||||||| | ||||||||||||||||||||||||||||| || || || || ||| Sbjct 146 CTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCTGCAGCTGCC 205 Query 121 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGTTGCCGCAACTTCTGCGGCGTCTGACGAT 180 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 206 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCATCTGACGAT 265 Query 181 GAA----CATCCATTACCGGTGGTTTCTTCGCTTCTCTTTTGTCTCGACGCGTCACTGTC 236 | ||||||||||||||||||||||||||||||| || ||||||| |||||||||| Sbjct 266 GTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTCGTCACTGTC 325 Query 237 TCTTCTCTTCTTACAATTAACCCTTTCTCCAAGCTCTCCG---ATGATTTTTCCGGAGAT 293 |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| Sbjct 326 TCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTTTCCGGAGAT 385 Query 294 ACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTTCCAACGTCT 353 ||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||| Sbjct 386 ACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTCCCGTCGTCT 445 Query 354 TCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-ATCAAACGATTCGCTAGGAATTACAC 412 ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| | Sbjct 446 TCTCAGCAAGCGAGAATGAGAGTTCATGAG-AATATCAAACGATTCGCTAGGAATTACGC 504 Query 413 TACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAAATGC 456 |||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 505 TACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGC 548 Score = 71.3 bits (38), Expect = 9e-12 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 481 TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGAT 521 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 617 TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGAT 657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26473395469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5