BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327610
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01890.1 | Symbols: | Pectin lyase-like superfamily protein... 1962 0.0
> AT4G01890.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:816210-818428 FORWARD LENGTH=1407
Length=1407
Score = 1962 bits (1062), Expect = 0.0
Identities = 1226/1306 (94%), Gaps = 7/1306 (1%)
Strand=Plus/Plus
Query 140 CGTCTCAGCCTCCTTCTTCCTCTCCAAAAGCTAACGACCCGTCGTCAAAATCTCCATCTC 199
||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 107 CGTCTCAGCCTCCTTCTCCCTCTCCAAACCCTAACGACCCGTCG---AAATCTCCATCTC 163
Query 200 TGCCCCAAGATCTCGACCACGAAGTAGTCTACAACGTGAAGAAATACGGTGCGGTCGGTG 259
| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 164 GGTCCCAAGATCTCGACCACGAAGTAGTTTACGACGTGAGGAAATACGGTGCGGTCGGTA 223
Query 260 ATGGTGTCACAGACGACACTGAATCGTTCAAGACAGCTTGGGATTCAGCTTGTGGCAACT 319
|||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 224 ATGGTGTCGCAGATGACACTGTGTCGTTCAAGACAGCTTGGGATTCAGCTTGTAGCAACA 283
Query 320 ACAAAAACAACACTGCCTCTGTCTTGCTTGTGCCTTACGGTTTCACTTTCATGATCCGTT 379
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 284 ACAAAAACAATACTGCCTCCGTCTTGCATGTGCCTTACGGTTTCACTTTCATGATCCGTT 343
Query 380 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGACGGGACCATCG 439
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 344 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGATGGGACCATCG 403
Query 440 TGCCACGGGATGGACCAAAGTCGTGGCCGAGCAGTTTAGACAAAAGACAATGGCTCGTCT 499
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 404 TGCCACGGGATGGACCAAAGTCGTGGCCAAGCAGTTTAAACAAAAGACAATGGCTCGCCT 463
Query 500 TTTATAGAATCAACGGAATGGCTTTA-AAGGGCGTTGGAGTTATCGACGGTCGTGGACAA 558
||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||
Sbjct 464 TTTATAGAATCAACGGAATGGCTCTACAAGG-CGCCGGAGTTATCGACGGTCGTGGACAA 522
Query 559 AATTGGTGGGATCTTCCCTGCAAACCTCATCGGCAGAATGTCAACAAAACTAAACTTGCT 618
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 523 AATTGGTGGGATCTTCCCTGCAAACCTCATCAGCAGAATGTCAACAAAACTAAACTTGCT 582
Query 619 GGTCCATGCGAAAGCCCCGCGGCTTTGAGGTTCTTCATGAGCTCGAATGTAACTGTGAAA 678
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 583 GGTCCATGTGAAAGCCCCGCCGCTTTAAGGTTCTTCATGAGCTCGAATGTAATTGTGAAA 642
Query 679 GGCCTGAGTATAAAGAACAGCCCTCAGGTTCACCTCAAACTCGACGGATGTCATGTTGTT 738
||||| |||||||| |||||||||||||||||||||||| | || |||||||| || |||
Sbjct 643 GGCCTAAGTATAAAAAACAGCCCTCAGGTTCACCTCAAATTAGATGGATGTCACGTAGTT 702
Query 739 CACATCAACTCCATTAGAATCATATCTCCGTCGTCAAGTCCCAACACTGATGGTATCCAC 798
|||||||||||| || |||||||||||||| || | ||||||||||| || |||||||||
Sbjct 703 CACATCAACTCCCTTCGAATCATATCTCCGCCGGCTAGTCCCAACACCGACGGTATCCAC 762
Query 799 ATTGAGAACTCCAAATCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 858
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATTGAGAACTCCAACTCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 822
Query 859 GTCTCGATAGGACCTGGATCATACGATATCGATATACGAAATCTCACTTGTGGACCAGGC 918
||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 823 GTCTCCATAGGACCCGGAGCATACGATATCGATATACGAAATATCACTTGTGGACCAGGA 882
Query 919 GGGCATGGAATTAGCATTGGAAGTTTGGGAGAAAAATCCTCACATGCGTGCGTCTCCAAC 978
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 883 GGGCATGGAATTAGCATTGGAAGTTTGGGAGAAAAAAACTCACATGCGTGTGTCTCCAAC 942
Query 979 GTTACGGTTAGAGACTCGTTTATAAAATTTTCCGAAAATGGAGTACGGATCAAGACATGG 1038
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 943 GTTACGGTTAGAGACTCGTTCATAAAATTTTCCGAAAATGGAGTACGAATCAAGACATGG 1002
Query 1039 CAAGGTGGATCCGGGTCCGTTTCGGGTGTAACATTTAACAATATCCATGTAGATACTGTC 1098
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1003 CAAGGTGGATCAGGGTCCGTTTCGGGTGTAACGTTTGACAATATCCATGTAGATACTGTC 1062
Query 1099 CGAAATCCGATAATCATCGATCAATACTATTGTACGGCTAAAAGTTGTGCTAACAAAACA 1158
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1063 CGGAATCCGATAATCATCGATCAATACTATTGCACGACTAAAAGTTGTGCTAACAAAACA 1122
Query 1159 TCGGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATCCGT 1218
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 TCAGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATTCGT 1182
Query 1219 AGCCCCCCTATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTCTCA 1278
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1183 AGTCCCCCAATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTTTC- 1241
Query 1279 GA-TATCGAATTGTTACCTTCaaaaaaaGATATTGTTGTGGATCCCTTCTGTTGGAATGC 1337
|| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 1242 GAATATCGAATTGTTACCTTCAAAAGAAGATATTGTTGTGGGTCCGTTCTGTTGGAATGC 1301
Query 1338 GTATGGGATTACGGATGAGTTCTCCGTACCTTTGATCTCGTGTCTTAAATCGAATCCTTC 1397
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1302 GTATGGGATCACGGATGAGTTCTCTGTACCTTTGATCTCGTGTCTCAAATCGAATCCTTC 1361
Query 1398 GACGTCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1443
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GACATCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1407
Score = 128 bits (69), Expect = 1e-28
Identities = 93/104 (89%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1 ATGTTGAAACTGTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATCA---CA 57
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGTTGAAACTTTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATTATAACA 60
Query 58 TTTTCTTTATTCTTCTATGAAACTGAAGCAAGACTACATCATCA 101
|||||| | || | ||||| |||||||||||| |||||||||||
Sbjct 61 TTTTCTCTCTTATCCTATGGAACTGAAGCAAGGCTACATCATCA 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5