BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327611
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01883.1 | Symbols: | Polyketide cyclase / dehydrase and li... 981 0.0
> AT4G01883.1 | Symbols: | Polyketide cyclase / dehydrase and
lipid transport protein | chr4:813068-815170 FORWARD LENGTH=1139
Length=1139
Score = 981 bits (531), Expect = 0.0
Identities = 636/685 (93%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGCGACGGCGATTCTCTCTGTAACTAACCCTAACGCCGTCGTCTTCGGATTTGGT 60
|||||||| ||||| ||||||||||||| ||||||||| | | | ||| ||||||||||
Sbjct 95 ATGTCTGCAACGGCAATTCTCTCTGTAAATAACCCTAAAGACTTAGTCACCGGATTTGGT 154
Query 61 AATCGGACA-TTCTGTTGTCGGAGCAACTTTACTAAACCCAGTTCGAGATTGTTT-C--C 116
||||||||| ||| || |||||||||||| ||||||||||||||||||||||| | |
Sbjct 155 AATCGGACATTTC-ATTCCCGGAGCAACTTTGCTAAACCCAGTTCGAGATTGTTTCCTTC 213
Query 117 TTCTTCTTCTCCGATGAAGCCTTTGACTCTTGATTCTAGATTCTCTCCTTTGATTTCAAC 176
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 214 TTCTTCTTCTCCGATGAAGCCTTTGACCCTTGCTTCTAGATTCTCTCCTTTGATTTCAAC 273
Query 177 AAATAGGTCCTTGAAATCTTCAGTATTCAGGAGATTTAATACTCTCATGGAGTGGCAAGA 236
|||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 274 AAATAGATCCTTTAAATCTTCAGTCTTCAGGAGATTTGATACTCTCATGGAGTGGCAAGA 333
Query 237 ATGCAAAGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 ATGCAAAGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGA 393
Query 297 ACGTGAATCAATTCCTAAATGGATGACATTCATTTCATCTGTTAAGGTATTGAAGGACAA 356
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 394 ACGAGAATCAATTCCTAAATGGATGACATTTATTTCATCCGTTAAGGTATTGAAGGACAA 453
Query 357 ACCCGATTTATCTCGATGGACCTTGAAATATAAAGCATTTGGTCAGAATCTTGAGTACGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ACCCGATTTATCTCGATGGACCTTGAAATATAAAGCATTTGGTCAGAATCTTGAGTACGC 513
Query 417 TTGGCTTGCTAAGAACTTGCAGGCAATTTCACCTCTCCCGAATCAGAAAATACATTGGAT 476
|||||||||||||||||||||| | | |||||| || || |||||||| |||||
Sbjct 514 TTGGCTTGCTAAGAACTTGCAG-C-----C---TCTCCCAAACCAAAAAATACACTGGAT 564
Query 477 TTCTCTAGAAGGCCTTCCTAACAAGGGCACTGTCCGCTTTTTCCCGCTAGGACCTTCATC 536
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 565 TTCTCTTGAAGGGCTTCCTAACAAGGGCACTGTCCGGTTTTTCCCGCTAGGACCTTCATC 624
Query 537 ATGTGAAGTAGAACTAACCTTTGCATATGAAGTTCCCCTGCTACTTATACCATTTGCAGC 596
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 625 ATGTGACGTAGAACTAACCTTTGCATATGAAGTTCCACTGCTACTTATACCATTTGCAGC 684
Query 597 GGCGCTTCAACCGCTCATGCAAGGATTGATCAAGAATAGTTTGGAGCAATTTGCAGAGAT 656
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 AGCGCTTCAACCGCTAATGCAAGGATTGATCAAGAACAGTTTGGAGCAATTTGCAGAGAT 744
Query 657 TGCAAAAAGCACAAAGACCACTTAG 681
||||||||||||||||||||||||
Sbjct 745 AGCAAAAAGCACAAAGACCACTTAG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5