BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327634
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01550.1 | Symbols: anac069, NAC069 | NAC domain containing ... 1572 0.0
AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing ... 388 5e-107
AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane m... 161 1e-38
> AT4G01550.1 | Symbols: anac069, NAC069 | NAC domain containing
protein 69 | chr4:673862-676411 REVERSE LENGTH=1723
Length=1723
Score = 1572 bits (851), Expect = 0.0
Identities = 956/1007 (95%), Gaps = 6/1007 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGATCTGGTAGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATGGTGAAAGATCTGGTTGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAT 246
Query 61 TACCTTAAGAACAAAATTCTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 120
|| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TATCTAAAGAACAAAATTTTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 306
Query 121 AACATCTGTAGTTACGACCCTATTTACTTGCCTTCGTTATCGAAGCTCAAATCTGACGAT 180
|||||||||||||||||||| |||||||||||||| ||||||||| | ||||| || |||
Sbjct 307 AACATCTGTAGTTACGACCCAATTTACTTGCCTTCTTTATCGAAGATAAAATCGGATGAT 366
Query 181 CCGGTTTGGTACTTCTTCTGTCCAAAGGAGTACACTTCTGCGAAGAAGAAGGTAACGAAG 240
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 367 CCTGTGTGGTACTTCTTCTGTCCAAAGGAGTATACTTCTGCGAAGAAGAAGGTAACGAAG 426
Query 241 AGGACTACAAGTTCTGGGTATTGGAAAGCTACTGGTGTTGATCGGAAAATCAAAGATAAG 300
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 AGGACTACAAGTTCAGGGTATTGGAAAGCTACTGGTGTTGATAGGAAAATCAAAGATAAG 486
Query 301 AGAGGTAATCGCGGCGAGATCGGGATTAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 487 AGAGGTAATCGCGGCGAGATTGGGATAAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 546
Query 361 CCTAAAGGAGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CCTAAAGGTGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 606
Query 421 GATCAGAGGAACTATGTTATCTGCCAAGTAATGTATAAGGGTGAAGATGGAGACGTCCCA 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 607 GATCAGAGGAACTATGTTATCTGCCAAGTGATGTATAAGGGTGAAGATGGAGACGTCCCA 666
Query 481 TCAGGTGGTAATAACTCGAGTGAGCCGAGTCAATCTATGGTCTCTGATTCGAATACTGTC 540
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 667 TCTGGTGGTAACAACTCGAGTGAGCCGAGTCAATCTTTGGTCTCTGATTCGAATACTGTC 726
Query 541 AGAGAGACGATTACCACAGCGCCTGAATTTGAGCAGCCAGGTCAAGAAAATTTCTTTGGT 600
|||| |||| | ||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 727 AGAGCTACGAGTCCCACAGCGCTTGAGTTTGAGAAGCCAGGTCAAGAAAATTTCTTTGGT 786
Query 601 ATGTCTGTGGATGATTTGAGAACTCCAATGAATGAGCAAAAACAAGAAGATTTCTCTCTG 660
|||||||||||||||||| | ||||||| |||| | ||||||||||||||||| ||
Sbjct 787 ATGTCTGTGGATGATTTGGGGACTCCAAAGAAT--G----AACAAGAAGATTTCTCTTTG 840
Query 661 TGGGATGTATTGGATCCAGACATGTTATTCAGTGATAACAACAATTCTACTGTGCAGCCA 720
||||||||| ||||||||||||||||||||||||| || |||||| |||||||||| |||
Sbjct 841 TGGGATGTACTGGATCCAGACATGTTATTCAGTGACAATAACAATCCTACTGTGCATCCA 900
Query 721 CAAGCTCCTCACTTAGCCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAAGCTCCTCACTTAACCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 960
Query 781 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTAATATCCAGACCAACCTTATCT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTCATATCCAGACCAACCTTATCT 1020
Query 841 ATGACAGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGAT 900
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 ATGACCGAGAACCGCAACGATCACAGGCCAAAGAAGGCTTTGTCAGGGATTATTGTTGAT 1080
Query 901 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 1140
Query 961 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTTTCT 1007
|||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1141 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCGAATAGACAATTTCT 1187
> AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing
protein 67 | chr4:656407-659178 REVERSE LENGTH=909
Length=909
Score = 388 bits (210), Expect = 5e-107
Identities = 393/481 (82%), Gaps = 13/481 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGATCTG-GTAGGGTATAGATTTTA-TCCAACGGGAGAGGAATTGATAAACC 58
||| ||||||||| | | ||||||||| |||| ||| |||||||||||| |||||||||
Sbjct 1 ATGATGAAAGATCCGACT-GGGTATAGA-TTTAGTCCGACGGGAGAGGAAGTGATAAACC 58
Query 59 ACTACCTTAAGAACAAAATTCTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGA 118
| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 59 ATTACCTAAAGAACAAAATTCTGGGTAAGACTTGGCTCGTTGATGAAGCCATTAGCGAGA 118
Query 119 TCAACATCT-GTAGTTACGA-CCCT--ATTTACTTGCCTTCGTTATCGAAGCTCAAATCT 174
||||||||| | | | || | ||| | | |||||| |||| | | | || ||||
Sbjct 119 TCAACATCTTGAA-TCACAAACCCAGCAAGGATTTGCCTAAGTTAGCTAGGATCCAATCG 177
Query 175 GACGATCCGGTTTGGTACTTCTTCTGTCCAAAGGAGTACACTT-CTGCGAAGAAGAAGGT 233
|| |||| | |||||||| |||| ||| | |||||||| | |||| |||| |
Sbjct 178 GAAGATCTTGAGTGGTACTTTTTCTCTCCGATTGAGTACACGAACC-CGAATAAGATGAA 236
Query 234 AACGAAGAGGACTACAAGTTCTGGGTATTGGAAAGCTACTGGTGTTGATCGGAAAATCAA 293
|| ||||||||| ||| ||||||||| ||||||| ||| |||||||||||||||||| |
Sbjct 237 AATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTAGTGGTGTTGATCGGAAAATTAG 296
Query 294 AGATAAGAGAGGTAATCGCGGCGAGATCGGGATTAAGAAGACGCTTGTGTATTATGAAGG 353
||||| ||||| ||| | | | ||| ||||||||||||||||||||||| |||||||
Sbjct 297 GGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGAAGACGCTTGTGTACCATGAAGG 356
Query 354 TA-GAGTTCCTAAAGGAGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTT 412
|| |||| ||| | |||||| | ||||||||||||||||| ||||||||||||||||| |
Sbjct 357 TAAGAGT-CCTCATGGAGTTAGAACTCCTTGGGTTATGCACGAGTATCACATCACTTGCT 415
Query 413 TGCCTCAAGATCAGAGGAACTATGTTATCTGCCAAGTAATGTATAAGGGTGAAGATGGAG 472
||||||| || ||||||| |||||| |||||||||||| |||||||||||||| || ||
Sbjct 416 TGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAAAGTATAAGGGTGAAGCTGCAG 475
Query 473 A 473
|
Sbjct 476 A 476
> AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane
motif1 | chr4:670483-672789 REVERSE LENGTH=1582
Length=1582
Score = 161 bits (87), Expect = 1e-38
Identities = 136/159 (86%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 846 AGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGATTATAG 905
|||||||||||||||||||| ||||| |||| || || |||||| | ||||||||||
Sbjct 1123 AGAGAACCGCAACGATCACATGCCAAGGAAACCTGTGACAGGGACCA---TTGATTATAG 1179
Query 906 CAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACATCAAG 965
||| |||||| |||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 1180 CAGCGATAGTGGCAGTGATGCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAG 1239
Query 966 TCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTT 1004
|||| | || ||||||||||||||||| |||||||||
Sbjct 1240 TCCAAAT-AT--TAGTGTTGGTAGTTCAAGTAGACACTT 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5