BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327645
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01420.1 | Symbols: CBL5 | calcineurin B-like protein 5 | ch... 898 0.0
> AT4G01420.1 | Symbols: CBL5 | calcineurin B-like protein 5 |
chr4:580038-581518 REVERSE LENGTH=612
Length=612
Score = 898 bits (486), Expect = 0.0
Identities = 573/615 (93%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 1 ATGGGATGTGTATGCAGCAAG-AACTTAGAAGGAAGAAGGCATGAAGACATTACCCTTCT 59
||||||||||| ||||||||| || ||||||||||||||||| ||||||||| | |||||
Sbjct 1 ATGGGATGTGTTTGCAGCAAGCAA-TTAGAAGGAAGAAGGCAAGAAGACATTTCGCTTCT 59
Query 60 TGCTTCTCAAACCTTTTTTAGCGAGGCTGAGGTTGAAGTTCTGCATGAATTATTCATCCA 119
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |
Sbjct 60 TGCTTCTCAAACCTTTTTTAGCGAGGCTGAGGTTGAAGTTTTGCATGGATTGTTCATCAA 119
Query 120 ACTCACTTCTTGTCTCAGCAACGACAATCTTTTGACCAAAGAACATTTTCAATTCATCTT 179
||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 120 ACTCACTTCTTGTCTTAGCAACGACAATCTTTTGACCAAAGAAAAATTTCAATTTATCTT 179
Query 180 AATCAAGAATACCAATAGGCGCAGTATTTCTGCTGACCGGATTTTCGGATTATTCGATAT 239
|||||||||||||| | ||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 180 GATCAAGAATACCAAAAAGCGCAGTCTTTCTGCAGAACGGATTTTTGGATTATTCGATAT 239
Query 240 GAGAAACGATGGGGCAATAGATTTTGGAGAGTTTGTACACACTCTCAACATTTTTCACCC 299
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GAGAAACGATGGGGCTATAGATTTTGGAGAGTTTGTACACACACTCAACATTTTTCACCC 299
Query 300 AAACTCATC-CCAAAGAGATAAGGCCATATTTGCATTTAGATTATACGATACTCGTCAGA 358
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AAACTCATCACC-AAGAGATAAGGCCATATTTGCATTTAGATTATACGATACTCGTGAGA 358
Query 359 CTGGATTCATTGAACCGGAGGAGGTTAAAGAGATGATAATAGACGTTCTAGAGGAATCAG 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 CTGGATTCATTGAACCGGAGGAGGTGAAAGAGATGATAATAGACGTTCTAGAGGAATCAG 418
Query 419 AACTTATGCTATCCGAGAGTATCATCGATTCTATCGTGTCTAAAACATTTGAAGAGGCGG 478
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 419 AACTTATGCTATCCGAGAGTATCATTGATTCTATCGTGTCTAAGACATTTGAAGAGGCCG 478
Query 479 ATTGGAAAAAGGATGGGAAAATAGATTTAGAAGAATGGGAGGATTTTGTTGCCAACTATC 538
|||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||
Sbjct 479 ATTGGAAAAAAGATGGGATAATAGATTTGGAAGAATGGGAGAATTTTGTTGCCACCTATC 538
Query 539 CTTGGACACTAAAGAACATGACTATCCCTTTCTTGAAGGACATACCAAGGATTTTTCCAA 598
||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 539 CTTTGACACTAAAGAACATGACTATCCCTTTCTTGAAGGACATTCCGAGGATTTTCCCAA 598
Query 599 CATT-CTTCCGGTAA 612
| || || |||||||
Sbjct 599 CCTTTCT-CCGGTAA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5