BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327649
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1323 0.0
> AT4G01360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF793)
(TAIR:AT1G01550.2); Has 99 Blast hits to 99 proteins in 25
species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0;
Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr4:564760-566310 FORWARD LENGTH=1386
Length=1386
Score = 1323 bits (716), Expect = 0.0
Identities = 929/1028 (90%), Gaps = 30/1028 (3%)
Strand=Plus/Plus
Query 48 TCGAAACCCGTTCAAGATTTTGTTTACGAAGAACAACAACGCTCGATTATCGCCAAAGCT 107
||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 246 TCGGAACCCGTTCAAGATTCTGTTTACGAAGAAGAACAATGCTCGATTATCGCCAAAGCT 305
Query 108 TCTCTCACTGTTGAACAATTTCGAGACTAACTTGATGGTATCGATTAGAGAACTTATACC 167
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 306 TCTCTCACTGTTGAACAATTTCGAGACTAACTTGACGGTATCGATTAGAGAACTTGTACC 365
Query 168 GAAGGATAAGAATGATATCATTAGTGTTTCTTGGATGATACAAGCTATGGAGTCTCTTTG 227
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 366 AAAGGATAAGAATGATATCGTTAGTGTTTCTTGGATGATACAAGCCATGCAGTCTCTTTG 425
Query 228 TGAGACACACAAGAGTATCAGGACGCTCGTGACGGATTTAGAGCTTCCAGTATCGGACTT 287
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct 426 TGAGACACACAAGAGTATCAGGACGCTCGTGAAGGATTTAGAGGTTCCAGTATCGGATTT 485
Query 288 GGAGGAAAATTTGATTTATATCTACTCTGACATTAGCTTGAACCTCCTTGAACTCTGCAA 347
|||||| ||||| |||||||||| ||||||| |||||||||| | |||||||||||
Sbjct 486 GGAGGAGAATTTCATTTATATCTTCTCTGACTTTAGCTTGAA---GCGGGAACTCTGCAA 542
Query 348 CGCCTTCATCTCTGAGATAGATCGTCT-GAACCATGGCAATCTATTACTCAAGTTTGCTT 406
|||||| | ||| |||||| ||| | | ||| ||||||||||||||||| ||||||||||
Sbjct 543 CGCCTTTACCTCAGAGATATATCATTTGGAA-CATGGCAATCTATTACTAAAGTTTGCTT 601
Query 407 TTAGTAAGCTGGAGACAAACAACTGTTCAGAGGAGTTTTCGTTATCGTATCTTGACAGTT 466
|||||||||||||||||||| | | | | | | | ||| | || | | | |||
Sbjct 602 TTAGTAAGCTGGAGACAAAC-A--G-T--G-GCAATATTC--T-TC--A----G-C-GTT 643
Query 467 GGAATCAGCACATGGTTTCCAAGAACCGGAGAATCGAAAACTGTGGCGCGGTTTTGAGTA 526
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 644 GGAATCAGCACATGGTTTCCAAGAACCCGAGTATCGAAAACTGGGGCGCGGTTTTGAGTA 703
Query 527 GGCTTGTTGAATCGATAGATCATCATCATC---TCTCCAAGAAGGCGAAGAAGAAACACT 583
|||| ||||||||||| ||||||||||||| |||||||||||| |||||||||| |||
Sbjct 704 GGCTGGTTGAATCGATGGATCATCATCATCATATCTCCAAGAAGGGGAAGAAGAAATACT 763
Query 584 CTGCGGAAGGAAAAGTCCTCTTGCGAGCTCTATACGGTGTAAAGGTCAAGACTTTATACA 643
|||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 764 CTGCGGAAGGAAAAGTTCTCTTACGAGTTTTATACGGTGTAAAGGTCAAGACTTTATACA 823
Query 644 TATTCAGCGTGTTTGCTGC-TGCGTTCTCGGGTTCTTCCAAGAATCTCTTCTATCTAAAC 702
||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 824 TATTCAGCGTGTTTGATGCAT-CGTTCTCGGGTTCTTCCAAGAATCTCTTCTATCTAACC 882
Query 703 ATTCCAAAGGAGATGGAGGAGCTTCCATGGGCACAAGCTTTCATGGAATTGCAGAACAGG 762
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 883 ATTCCAAAGGAGATGGAGGAGCTTCCATGGGTTCAAGCTTTCATGGAACTGCAGAACACT 942
Query 763 ATTAACCCAGTGATCAAAAACACATTCTTATCAGACAAATTCACTGTTATAAAAGATCTC 822
|||||||| | ||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 943 ATTAACCCGGAGATCAAAAACACATTTTTATCAGACGGATTCACGGTTATAAAAGATCTC 1002
Query 823 GAGGCTGTTGAAACCGGTGTGAAGAAGCTTTACTCAGAGGTACAAGAAGGGTCAGTTCCT 882
||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 1003 GAGGCTGTTGAAACCGGTGTGAAGAAGCTTTACACAGCGGTACAAGAAGGGTCGGTTCCT 1062
Query 883 ATTTTGTTGGTAGAGCCATTAAAGAAGTCAGTGATAGAACTTTCGGAAAGGTTTGAGCTT 942
|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1063 ATTTTGTTAGTGGAACCATTGGAGAAGTCAGTGATAGAACTTTCGGAAAGGTTTGAGCTA 1122
Query 943 GTCTCCAAGGAAACACGTTGCTTGTCGAAGATGGTGATCTCTGCCCGAGACGCATTGTTC 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GTCTCCAAGGAAACACGTTGCTTGTCGAAGATGGTGATCTCTGCCCGAGACGCATTGTTG 1182
Query 1003 GAGAGCCTCTGGACGAAATACGCTA-AAGAGCTGGGAGTGGCATTGCCACCGATGGTTAA 1061
|||||||| |||||||||| ||| | ||||||| |||||| |||||||| ||||||||||
Sbjct 1183 GAGAGCCTGTGGACGAAATGCGC-AGAAGAGCTAGGAGTGACATTGCCAACGATGGTTAA 1241
Query 1062 AAGTGTTA 1069
||||||||
Sbjct 1242 AAGTGTTA 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5