BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327678
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01010.1 | Symbols: ATCNGC13, CNGC13 | cyclic nucleotide-gat... 3238 0.0
AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel... 1611 0.0
AT2G46430.1 | Symbols: ATCNGC3, CNGC3, CNGC3.C | cyclic nucleot... 449 4e-125
> AT4G01010.1 | Symbols: ATCNGC13, CNGC13 | cyclic nucleotide-gated
channel 13 | chr4:434569-437242 REVERSE LENGTH=2091
Length=2091
Score = 3238 bits (1753), Expect = 0.0
Identities = 1993/2106 (95%), Gaps = 27/2106 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGGCCGCGACAATCGTGTAAGGTTCAGAGATTGGATTTCAGAAGGATCATTA 60
||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTTTTGGCCGCAACAATCGTGTAAGGTTCAGAGATTGGATTTCAG-AGG------G 53
Query 61 ACCACAGAGTATGGTTACGGAAG--A-AAAGTTAGACCATCTCTAAACACAGTTTTGAAG 117
| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 54 A--ACAGAGTATGGTTACGGAAGAAATAAAGCTAGACCATCTCTAAACACAGTTTTGAAG 111
Query 118 AATGTTCGTAGAGGGTTTGAGAAAGGTTCTGATAAAATCAGG---AC-TTTTAAGAAGAG 173
|||||||||||||| || ||||| || ||| | || || | |||||||||
Sbjct 112 AATGTTCGTAGAGGACTTAAGAAA---CCT-TTAAGTTTTGGTTCACATAATAAGAAGAG 167
Query 174 AGATTCT-A-GC-ACCACCACAGATA-AGAAGAATATTATAAACCCACAAGGCTCTTTTT 229
||||||| | | | ||||| | | ||||||||||||||||||||||||| |||||||
Sbjct 168 AGATTCTAATTCTAGTACCAC-TACACAGAAGAATATTATAAACCCACAAGGATCTTTTT 226
Query 230 TGCAGAACTGGAACAAAATCTTTCTTTTTGCTTCTGTGATTGCTTTGGCCATTGATCCAT 289
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 227 TACAGAACTGGAACAAAATCTTTCTTTTTGCTTCAGTGATTGCTTTGGCTATTGATCCAT 286
Query 290 TGTTTTTCTATATTCCTATTGTTGATGGAGAAAGAAACTGCCTTAATTTGCATCATAACT 349
||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 287 TGTTTTTCTATATTCCTATTGTTGATGGAGAAAGACACTGTCTTAATTTGCATCGTAACT 346
Query 350 TGGAGGTAGCAGCTAGTGTGCTTCGTACGTTTATAGATGCCTTCTACATCATTCACATTG 409
||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 347 TGGAGATAGCAGCTAGTGTGCTTCGCACGTTTATAGATGCTTTCTACATCATTCACATTG 406
Query 410 TGTTTCAGTTTAGAACTGCTTATATTTCTCCTTCTTCTCGGGTTTTCGGAAGAGGCGAGT 469
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 407 TGTTTCAGTTTAGAACTGCTTATATCTCTCCTTCTTCTCGTGTTTTCGGAAGAGGCGAGT 466
Query 470 TGGTTGATGATCCTAAAGCTATAGCCATTAAGTATCTCTCCTCCTACTTCATCATCGATG 529
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 467 TGGTTGATGATCCTAAAGCTATAGCCATCAAGTACCTCTCCTCCTACTTCATCATCGATC 526
Query 530 TTCTCTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTTATCCCCAATGTCAACA 589
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 TTCTTTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTCATCCCCAATGTCAACA 586
Query 590 AGCCGGTCTCTTTGATCACTAAGGAGTACTTGATTACTGTCATATTTACTCTATACATTC 649
||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||
Sbjct 587 AGCCGGTCTCTTTGATCACTAAGGACTATTTGATAACTGTCATATTTACTCAATACATTC 646
Query 650 CCAGGATTCTTCGTATTTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTA 709
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CAAGGATTCTTCGTATCTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTA 706
Query 710 CTGAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTGAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATG 766
Query 770 TGTTTGGAGCGTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAG 829
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGTTTGGAGCCTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAG 826
Query 830 CTTGCGAGAAGATACCAGAAGTATGTACCTTTAGATTTCTCTACTGCGATGGAAACAGTA 889
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 827 CTTGTGAGAAGATACCAGAAGTGTGTAACTTTAGATTTCTCTACTGCGATGGAAACAGTA 886
Query 890 GTGTTAGAAACGATTTCCTGACAAACTCGTGCCCGTTTATCAACCCTGATGATATAACGA 949
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 887 GTGTTAGAAACGATTTCCTGACTACCTCGTGCCCGTTTATCAACCCTGATGATATAACAA 946
Query 950 ATTCAACGGTCTTCAACTTTGGCATCTTTACTGATGCTTTAAAGAGTGGGATTGTTGAAT 1009
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 947 ATTCAACTGTCTTCAACTTTGGTATCTTTACTGATGCTTTAAAGAGTGGGATTGTTGAAT 1006
Query 1010 CAGATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAATTTAAGTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CAGATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAATTTAAGTG 1066
Query 1070 CATTGGGACAAAATCTCAATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTATCAA 1129
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1067 CATTGGGACAAAATCTCAATACAAGCAAATTCGTTGGGGAAATCATATTTGCTGTATCAA 1126
Query 1130 TTTGCATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGG 1189
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TTTGTATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGG 1186
Query 1190 AATCGACAACAGTTAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGA 1249
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AATCAACTACAGTGAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGA 1246
Query 1250 TGTCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAACAATATA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1247 TGTCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAGCAGTACA 1306
Query 1310 AATGGCAAGAAACTAGAGGAGTCGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACC 1369
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1307 AATGGCAGGAAACTAGAGGAGTAGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACC 1366
Query 1370 TCAGGAGAGACATCAAACGCCATTTTTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCG 1429
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1367 TCAGGAGAGACATCAAACGCCATTTCTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCG 1426
Query 1430 AGATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCCGTGCTATACA 1489
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1427 AGATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCAGTGCTCTACA 1486
Query 1490 CTGAGAACAGCTATGCAATTCGAGAAGGAGACCCAGTGGAGGAGATGTTGTTTGTCATGA 1549
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1487 CCGAGAACAGCTATGCAATTCGAGAAGGAGATCCAGTGGAAGAGATGTTGTTTGTCATGA 1546
Query 1550 GAGGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGTAT 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GAGGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGTAT 1606
Query 1610 ACCTAAAACCTAGTGACTTTTGCGGCGAAGATCTTCTCACATGGGCATTGGATCCTCAAT 1669
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1607 ACCTAAAACCTAGTGACTTTTGCGGCGAAGATCTTCTCACATGGGCATTAGATCCTCAAT 1666
Query 1670 CTTCGTCTCATTTTCCGATATCGACGAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCT 1729
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1667 CTTCGTCTCATTTTCCGATATCGACTAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCT 1726
Query 1730 TTGCT-TTAGCAGCAGATGATCTCAAGCTCGTTGCTTCACAATTCAGACGACTCCATAGC 1788
||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1727 TTGCTCTT-GCAGCAGATGATCTCAAGCTTGTTGCTTCACAGTTCAGACGACTACATAGC 1785
Query 1789 AAACAGCTTCAACATACTTTCAGGTTTTATTCGGTACAATGGAGAACTTGGGGTGCGTCT 1848
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1786 AAACAGCTTCAACATACTTTCAGGTTTTATTCGGTTCAATGGAGAACTTGGGGTGCGTCT 1845
Query 1849 TTCATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGGTCATTAACCGAA 1908
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1846 TTCATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGATCATTAACCGAA 1905
Query 1909 GAAGAAGATCGGTTCCGAGACGCGATTGCAAAACGCGAACGCGATGCGGCGTCTTCGTCG 1968
||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 1906 GAAGAAGATCGATTCCGAAACGCGATCACAAAACGCGAACGCAATGCGGCGTCTTCGTCT 1965
Query 1969 AGCCTGGTTGCAACGTTATACGCGTCGCGGTTTGCTTCAAACGCGCTTCGCAATCTGCGT 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 AGCCTGGTTGCAACGTTATACGCGTCGCGGTTTGCTTCAAACGCGCTTCGCAATCTGCGT 2025
Query 2029 ACCAACAACCTTCCTGTGCTCCCTCCTAAACCCTCCGAGCCTGATTTCAGTCTTCGAAAC 2088
|| |||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2026 ACAAACAACCTACCTTTGCTACCTCCTAAACCCTCCGAGCCTGATTTCAGTCTCCGAAAC 2085
Query 2089 CCTTAA 2094
||||||
Sbjct 2086 CCTTAA 2091
> AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel
10 | chr1:132330-135831 REVERSE LENGTH=2397
Length=2397
Score = 1611 bits (872), Expect = 0.0
Identities = 1474/1761 (84%), Gaps = 55/1761 (3%)
Strand=Plus/Plus
Query 198 GAAGAATATTATAAACCCACAAGG-CTCTTTTTTGCAGAACTGGAACAAAATCTTTCTT- 255
|||||| || |||||||| | ||| || ||| | ||||||||||||||||| ||| ||
Sbjct 372 GAAGAACATCATAAACCCGC-AGGATTCGTTTCTCCAGAACTGGAACAAAATATTT-TTA 429
Query 256 TTTGCTTCTGTGATTGCTTTGGCCATTGATCCATTGTTTTTCTATATTCCTATTGTTGAT 315
||||||| |||| |||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 430 TTTGCTTGTGTGGTTGCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGAT 489
Query 316 GGAGAAAGAAACTGCCTTAATTTGCA-TCATAACTTGGAGGTAGCAGCTAGTGTGCTTCG 374
| | ||| |||| |||| |||| | ||| || |||||| |||| || ||| |||||||
Sbjct 490 AGCGCAAGGCACTGTCTTACTTTGGACTCA-AAGTTGGAGATAGCTGCGAGTTTGCTTCG 548
Query 375 TACGTTTATAGATGCCTTCTACATCATTCACATTGTGTTTCAGTTTAGAACTGCTTATAT 434
|||| | || |||||||| ||||| |||||||||||||||||||| || || ||||| ||
Sbjct 549 TACGCTCATCGATGCCTTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACAT 608
Query 435 TTCTCCTTCTTCTCGGGTTTTCGGAAGAGGCGAGTTGGTTGATGATCCTAAAGCTATAGC 494
|||||||||| |||||||| |||||||| || |||| |||||| |||| || |||||
Sbjct 609 CGCTCCTTCTTCGCGGGTTTTTGGAAGAGGTGAACTGGTAGATGATGCTAAGGCAATAGC 668
Query 495 CATT-AAGTATCTCTCCTCCTACTTCATCATCGATGTTCTCTCTATCCTTCCACTCCCAC 553
| || ||||||||||| || ||||||||||| ||| | |||||||||||||| |||||||
Sbjct 669 C-TTAAAGTATCTCTCTTCTTACTTCATCATTGATCTACTCTCTATCCTTCCTCTCCCAC 727
Query 554 AGCTTGTAGTCTTAGCTGTTATCCCCAA-TGTCAACAAGCCGGTCTCTTTGATCACTAAG 612
|| | ||||| ||||| ||||| |||| |||||| |||| ||||||||| | || ||
Sbjct 728 AGATAGTAGTTTTAGCCGTTAT-TCCAAGCGTCAACCAGCCAGTCTCTTTGCTAACAAAA 786
Query 613 GAGTA-CTTGATTACTGT-CATATTTACTCTATACATTCC-CAGGATTCTTCGTATTTAT 669
|| || ||| | | | | |||| || ||| ||| |||| | ||||||| ||||| |||
Sbjct 787 GACTACCTT-A-AATTTTCCATAATTGCTCAATATGTTCCTC-GGATTCTCCGTATGTAT 843
Query 670 CCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACTGAAACCGCTTGGGCTGGA 729
|| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 844 CCGCTTTACACTGAAGTGACAAGAACATCTGGCATTGTTACTGAAACAGCATGGGCTGGA 903
Query 730 GCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATGTGTTTGGAGCGTTATGGTAC 789
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 904 GCTGCTTGGAACCTCTCTCTCTATATGTTAGCCAGTCATGTGTTTGGAGCTTTATGGTAC 963
Query 790 TTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAGCTTGCGAGAAGATACCAGAA 849
||||| |||||||||||||||||||||||||||| || || |||||||||| | | ||
Sbjct 964 TTAATCTCAGTAGAACGAGAAGACAGATGCTGGCAAGAGGCATGCGAGAAGACA--A-AA 1020
Query 850 G-TATGTACCTTT-AGATTTCTCTACTGCGATGGAAAC-A--GTAGTGTTAGAAACGATT 904
| | |||| | | | ||| |||||||| || |||| | ||| ||||| ||| |||
Sbjct 1021 GGT-TGTAA-TATGAAATTCCTCTACTGTGA---AAACGATCGTAACGTTAGCAACAATT 1075
Query 905 TCCTGACAAACT-CGTGCCCGTTTATCAACCCTGATGATATAACGAATTCAACGGTCTTC 963
||||||| | || | ||||| ||| || |||||| ||||||||| || ||||| |||||
Sbjct 1076 TCCTGACCA-CTTCTTGCCCATTTCTCGACCCTGGTGATATAACAAACTCAACCATCTTC 1134
Query 964 AACTTTGGCATCTTTACTGATGCT-TTAAAGAGTGG-GATTGTTGAATCAGATGATTTCT 1021
|||||||||||||| ||||||||| |||| |||||| | ||||||||||| |||||||||
Sbjct 1135 AACTTTGGCATCTTCACTGATGCTCTTAA-GAGTGGCG-TTGTTGAATCACATGATTTCT 1192
Query 1022 GGAAGAAGTTCTTCTACTGCTTCTGGTGGGGT-TTGCGTAATTTAAGTGCATTGGGACAA 1080
||||||| |||||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct 1193 GGAAGAAATTCTTCTACTGCTTCTGGTGGGGTCTT-CGAAATCTGAGTGCATTGGGACAG 1251
Query 1081 AATCTC-AATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTATCAATTTGCATATC 1139
|||||| || || |||||||||||||| |||||||| |||||| ||||||| ||||||||
Sbjct 1252 AATCTCCAA-ACTAGCAAATTCGTTGGTGAAATCATATTTGCTATATCAATCTGCATATC 1310
Query 1140 TGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGGAATCGACAAC 1199
||||||||||||||| || |||||||||||||||||||||||||| ||||| || |||||
Sbjct 1311 TGGACTAGTCTTATTTGCTCTACTTATCGGCAATATGCAGAAATATTTGGAGTCAACAAC 1370
Query 1200 AGTTAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGATGTCTCATCG 1259
|||| | |||||||| ||||| |||||||| |||||||||||||| |||||||||||| |
Sbjct 1371 AGTTCGAGAAGAGGAAATGAGGGTGAGAAAGAGAGATGCAGAGCAGTGGATGTCTCATAG 1430
Query 1260 AATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAACAATATAAATGGCAAGA 1319
||||||||| || ||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1431 AATGTTACCTGAAGACCTGAGGAAACGTATCAGAAGATATGAACAATATAGATGGCAAGA 1490
Query 1320 AACTAGAGGAGTCGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACCTCAGGAGAGA 1379
|| |||||||| |||||||||| |||||| ||||| ||||||||||||||||| |||||
Sbjct 1491 GACAAGAGGAGTTGAAGAAGAAACCCTTCTTCGTAACCTCCCTAAAGACCTCAGAAGAGA 1550
Query 1380 CATCAAACGCCATTTTTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCGAGATAATGGA 1439
|| ||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1551 TATTAAACGCCATCTTTGCCTCGATCTCCTCAAGAAAGTACCTTTGTTTGAGATAATGGA 1610
Query 1440 TGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCCGTGCTATACACTGAGAACAG 1499
|||||| || || || || || || || | ||||| ||| ||||| ||||| ||||||||
Sbjct 1611 TGAGCAGTTACTTGACGCGGTTTGCGATAGGCTAAGACCTGTGCTCTACACCGAGAACAG 1670
Query 1500 CTATGCAATTCGAGAAGGAGACCCAGT-GGAGGAGATGTTGTTTGTCATGAGAGGAAAAC 1558
|| | || || |||||||| || || || ||| ||||||||||| |||||||||| ||
Sbjct 1671 TTACGTGATCCGTGAAGGAGATCCTGTTGG-GGAAATGTTGTTTGTTATGAGAGGAAGAC 1729
Query 1559 TGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGT-ATACCTAAAA 1617
|| | || |||||||| || || || | | || ||||| || ||||| | |||||||
Sbjct 1730 TGGTAAGTGCCACCACTAATGGAGGAAGAAGTGGGTTCTTCAATGCCGTGA-ACCTAAAG 1788
Query 1618 CCTAGTGACTTT-TGCGGCGAAGATCTTCTCACATGGGCATTGGATCCTCAATCTTCGTC 1676
| ||||| ||| ||||| |||||||||||| | |||||||| |||||||||||||| ||
Sbjct 1789 GCAAGTGA-TTTCTGCGGAGAAGATCTTCTCCCGTGGGCATTAGATCCTCAATCTTCTTC 1847
Query 1677 TCATTTTCCGATATCGACGAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCTTTGCTTT 1736
||| ||||| || ||||| ||||||||||||||| | || ||||| |||||||||||| |
Sbjct 1848 TCACTTTCCCATCTCGACAAGAACAGTTCAAGCTCTCACTGAAGTCGAAGCCTTTGCTCT 1907
Query 1737 -AGCAGCAGATGATCTCAAG-CTCGTTGCTTCACAATTCAGACGACTCCATAGCAAACAG 1794
| |||| || ||||||||| || || ||||||||||||||||| ||||||||||| ||
Sbjct 1908 CA-CAGCTGAGGATCTCAAGTCT-GTCGCTTCACAATTCAGACGCCTCCATAGCAAGCAA 1965
Query 1795 CTTCAACATACTTT-CAGGTTTTATTCGGTACAATGGAGAACTTGGGGTGCGTCTTTCAT 1853
|| ||||||||||| | ||||||| || || ||||||||||| ||| | | |||||| ||
Sbjct 1966 CTCCAACATACTTTTC-GGTTTTACTCAGTGCAATGGAGAACATGGAGCGTGTCTTTTAT 2024
Query 1854 ACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGGTCATTAAC-CGAAGAAG 1912
|||||| |||||| ||||| | || |||||||| |||| | |||| || | ||| ||||
Sbjct 2025 ACAAGCAGCGTGGAGGAGATACTGTCGGAGGAAGTTAGCCAAGTCACTA-CGCGATGAAG 2083
Query 1913 AAGATCGGT-TCCGAGACGCG 1932
||||||| | ||||||| |||
Sbjct 2084 AAGATCG-TCTCCGAGAAGCG 2103
> AT2G46430.1 | Symbols: ATCNGC3, CNGC3, CNGC3.C | cyclic nucleotide
gated channel 3 | chr2:19058294-19061436 FORWARD LENGTH=2462
Length=2462
Score = 449 bits (243), Expect = 4e-125
Identities = 931/1252 (74%), Gaps = 91/1252 (7%)
Strand=Plus/Plus
Query 667 TATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACTGAAACCGCTTGGGCT 726
||||| |||| || ||||| |||||||| ||||| | || |||||||| |||||||||
Sbjct 854 TATCCGCTTTTCAAGGAAGTAACAAGAACTTCTGGTTTGGTAACTGAAACTGCTTGGGCT 913
Query 727 GGAGCTGCTTGGAACCTA-TCTCTCTATATGTTAGCCAGTCATGTGTTTGGAG-CGTTAT 784
|| ||||||| |||||| || ||||| |||||||| || ||||| ||||| | | || |
Sbjct 914 GGTGCTGCTTTAAACCTATTC-CTCTACATGTTAGCTAGCCATGTTTTTGG-GTCTTTTT 971
Query 785 GGTACTTAATATCAG-TAG-AACGAGAAGACAGATGCTGGCGTGAAGCTTGCGAGAAGAT 842
||||||| || || | ||| || || |||| ||||| |||||||| || || | |||||
Sbjct 972 GGTACTTGATTTC-GATAGAAAGGA-AAGATAGATGTTGGCGTGAGGCGTGTGCTAAGAT 1029
Query 843 ACCAGAAGTATGTACCTTTA-G-ATTTC-TCTACTGCGATGGAAACAGTAGTGTTAGA-A 898
| ||||| | || | | | | | | | | | |||| | | | || || | ||| |
Sbjct 1030 A-CAGAA-T-TGCA-C-TCATGCA-TACTTATACT--G-T-TCACCAACAGGGGAAGACA 1079
Query 899 ACGA-TTTCCTGACAAAC---TCGTGCCCGTTTATC-AACCCTGATGATATAACGAATTC 953
| | || | |||| || || ||||| ||| | ||| || || || || || ||
Sbjct 1080 A-TAGGTTATTTTTAAACGGTTCTTGTCCGTTGATCGATCCC-GAAGAAATCACAAACTC 1137
Query 954 AACGGTCTTCAACTTTGGCATCTTTACTGATGCTTTAAAGAGTGGGA-TTGTTGAATC-A 1011
||||| ||||||||||| || || ||||||| || || | ||| |||| || || |
Sbjct 1138 GACGGTTTTCAACTTTGGTATATTCGCTGATGCATTGCAGTCT-GGAGTTGTGGAGTCTA 1196
Query 1012 GATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAAT-TTAAGTGC 1070
|| |||||| |||||||| |||||||| |||||||||||| | || ||| || |||||
Sbjct 1197 GA-GATTTCCCTAAGAAGTTTTTCTACTGTTTCTGGTGGGGTCTCCGCAATCTT-AGTGC 1254
Query 1071 ATTGGGACAAAATC-TCAATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTA-TCA 1128
||||| ||||| | | || ||||| || | || || ||||| ||||| || ||
Sbjct 1255 TTTGGGCCAAAA-CTTGAAGACGAGTGCCTTTGAAGGAGAGATCATTTTTGCAATAGTC- 1312
Query 1129 ATTTGCATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTG 1188
||||| || |||||||||||||| || || || || || || |||||||||||||| |||
Sbjct 1313 ATTTGTATTTCTGGACTAGTCTTGTTTGCTCTCCTCATTGGAAATATGCAGAAATATTTG 1372
Query 1189 GAATCGACAACAGTTAGGGAAGAGGAGATGAGAGTGAGAAA-AAGAGATGCAGAGCAATG 1247
|||| || || || || | ||||| |||||||||| ||| |||||||||||||||||
Sbjct 1373 CAATCAACTACTGTAAGAGTTGAGGAAATGAGAGTGA-AAAGGAGAGATGCAGAGCAATG 1431
Query 1248 GATGTCTCATCGAATGTTACCCGATGA-CTTGAGGAAACGTATCAG-AAGGTATGAACAA 1305
|||||||||||| ||||| || || || || ||| ||||||||| | || || |||||
Sbjct 1432 GATGTCTCATCGGATGTTGCCAGACGATCT-GAGAAAACGTATCCGTAAA-TACGAACAG 1489
Query 1306 TATAAATGGCAAGAAACTAGAGGAGTCGAAGAAGAAAAC-CTTCTG-CGTAATCTCCCTA 1363
||||||||||||||||| | |||||| || |||||| | ||||| | || ||| || |
Sbjct 1490 TATAAATGGCAAGAAACCAAAGGAGTTGAGGAAGAAG-CTCTTCTCTC-TAGTCTTCCAA 1547
Query 1364 AAGACCTCAGGAGAG-ACATCAAACGCCATTTTTGCCTCGATCTT-CTCAAGAAAG-TAC 1420
|||| ||||| | || |||| ||||||||| |||| ||| | || ||||| |||| | |
Sbjct 1548 AAGATCTCAGAA-AGGACATTAAACGCCATCTTTGTCTCAAG-TTGCTCAA-AAAGGTGC 1604
Query 1421 CTCTG-TTCGA-GATAATGGATGAGCAATTGCTAGATGC-CGTGTGTGACAAG-CT-AAA 1475
|| || ||| | | || ||||||| | || |||||||| | | |||| | | || |||
Sbjct 1605 CT-TGGTTCCAAGCTA-TGGATGATCGGTTACTAGATGCTC-TATGTG-CTCGTCTCAAA 1660
Query 1476 ACCCGTGCTATACACTGAGAACAGCTATGCAAT-T-CGAGAAGGAGACCCAGTGGAGGAG 1533
|| || || || || ||||| || || || | | || ||||| || |||||||||||
Sbjct 1661 ACG-GTTCTTTATACAGAGAAGAGTTA--CATTGTGCGTGAAGGTGAACCAGTGGAGGAT 1717
Query 1534 ATGTTGTTTGTCATGAGAGGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGC 1593
||||||||| | ||||||||||| | || ||| |||| || | |||||| | || ||
Sbjct 1718 ATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTGGCAGAACTGGT 1777
Query 1594 TTCTTTAACGCCGTAT-ACCTAAAACCTAGTGACTTT-TGCGGCGAAGATCTTCTCACAT 1651
||||| || | || | || || || |||| ||| || || | ||||||||||| |
Sbjct 1778 TTCTTCAATTCTGT-TGACTTAGTTGCTGGTGA-TTTCTGTGG--A-GATCTTCTCACTT 1832
Query 1652 GGGCATTGGATCCTCA-ATCTTCGTCTCATTTTCCGATATCGACG-AGAACAGTTCAAGC 1709
||||||| ||||||| | ||| | || || || || || | | ||||| ||||||||
Sbjct 1833 GGGCATTAGATCCTCTCAG-TTC--C-CAATTCCCTATCTCTA-GTAGAACCGTTCAAGC 1887
Query 1710 TTTAACCGAAGTAGAAGCCTTTGCTT-TAGCAGCAGATGATCTCAAGCTCGTTGCTTCAC 1768
||| || ||||| |||| |||| ||| | |||| |||||||||||| | || ||| | |
Sbjct 1888 TTTGACAGAAGTCGAAGGCTTT-CTTCTCTCAGCTGATGATCTCAAGTTTGTCGCTACTC 1946
Query 1769 AAT-TCAGACGACTCCATAGCAAACAGCTTCAACATACT-TTCAGGTTTTATTCGGTACA 1826
| | || | || ||||||||||| || || | ||| | | |||||||||||||| || ||
Sbjct 1947 AGTATC-GTCGCCTCCATAGCAAGCAACTCCGACACA-TGTTCAGGTTTTATTCAGTGCA 2004
Query 1827 ATGG-AGAACTTGGGGTGCGTCTTTCATACAAGCGGCGTGGCGGAGACATTG 1877
|||| ||| | |||| || | ||| |||||||| || ||| |||||||||
Sbjct 2005 ATGGCAGA-CATGGGCAGCATGTTTTATACAAGCAGCATGGAAGAGACATTG 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5