BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327681
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1428 0.0
AT4G00950.1 | Symbols: MEE47 | Protein of unknown function (DUF... 1249 0.0
AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 100 4e-20
> AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr4:403320-404810 REVERSE LENGTH=970
Length=970
Score = 1428 bits (773), Expect = 0.0
Identities = 863/904 (95%), Gaps = 16/904 (2%)
Strand=Plus/Plus
Query 821 Ctcacatcatggaccatcatcagtatcatcatcatgatcaataccaacatca-A--ATGA 877
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 78 CTCACATCATGGACCATCATCAGTATCATCATCATGATCAATACCAACATCAGATGATGA 137
Query 878 CTATTACTAACAATAATCCCTATaacaccatcgtcacaacacaaccaccaccacctacaa 937
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 138 CTAGTACTAACAATAATTCCTATAACACCATCGTCACAACACAACCACCACCA---ACAA 194
Query 938 caacaacaatggattcaacaacagcaacaacaaTGATAATGGATGATGAGAAGAAGTTGA 997
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 195 CAACAACAATGGATTCAACAACAGCAACAACTATGATAATGGATGACGAGAAGAAGTTGA 254
Query 998 TGACGACGATGAGCACTAGGCCGCAAGAACCAAGAAACTGTCCAAGATGCAACTCAAGCA 1057
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGACGACAATGAGCACTAGGCCGCAAGAACCAAGAAACTGTCCAAGATGCAACTCAAGCA 314
Query 1058 ACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCACAGCCTAGGTACTTGTGTAAGT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 ACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCACAGCCTAGGTACTTGTGTAAGT 374
Query 1118 CTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAGGTT 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAGGTT 434
Query 1178 CTAGAAAGAACAAGAAGCTTCCACTACTACTTTCTAATTCCTCTACTTCTTCTTCCACCA 1237
||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 435 CTAGAAAGAACAAGAAGCTTCCATT--T-C---CTAATTCCTCTACTTCTTCTTCCACCA 488
Query 1238 AGAACCTCCCAGATCTTAACCCTCCGTTT-GTCTTCACGTCATCACCATCATCATCAAAC 1296
|||||||||| ||||| |||||||| ||| |||||||| |||||| | ||||||||||||
Sbjct 489 AGAACCTCCCGGATCTCAACCCTCC-TTTCGTCTTCACATCATCAGCTTCATCATCAAAC 547
Query 1297 CCTAACAAGACGCATCAAAACAATAATGACCTCAGCCTTTCATTCTCCTCCCCTATGCAA 1356
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 548 CCTAGCAAGACGCATCAAAACAATAATGACCTCAGCCTATCCTTCTCCTCCCCTATGCAA 607
Query 1357 GACAAGCGAGCTCAAGGGCATTACAGTCATTTCACCGAGCAAGTTGTGACAGGAGGGCAG 1416
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 608 GACAAGCGAGCTCAAGGGCATTACGGTCATTTCAGTGAGCAAGTTGTGACAGGAGGGCAG 667
Query 1417 AACTGTCTTTTCCAAGCTCCTATGGGAATGATTCAGTTTCGTCAAGAGTATGATCATGAC 1476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AACTGTCTTTTCCAAGCTCCTATGGGAATGATTCAGTTTCGTCAAGAGTATGATCATGAG 727
Query 1477 CACCACAAAAAGAATCTTGGGTTTTCATTAGACAGGAACAAGGAAGAGATTAGTAATCAT 1536
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 728 CACCCCAAAAAGAATCTTGGGTTTTCATTAGACAGGAACGAGGAAGAGATTGGTAATCAT 787
Query 1537 GATAACTTCGTTGTTAATGGAG-AAGGAAGTAAGATGATGTATCCTTATGGAGATCATGA 1595
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 788 GATAACTTCGTTGTTAATG-AGGAAGGAAGTAAGATGATGTATCCTTATGGAGATCATGA 846
Query 1596 AGACCGTCATCAACATAACCATGTGAGACACGATGATGGTAATAAGAAGAGAGAAGGTGG 1655
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGACCGTCAACAACATCACCATGTGAGACACGATGATGGTAATAAGAAGAGAGAAGGTGG 906
Query 1656 TTCAAGCAATGAGCTATGGAGTGGAATCATCCTAGGTGGTGACAGTGGTGGACCAACATG 1715
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 907 TTCAAGCAATGAGCTATGGAGCGGAATCATCCTAGGTGGTGATAGTGGTGGACCAACATG 966
Query 1716 GTGA 1719
||||
Sbjct 967 GTGA 970
> AT4G00950.1 | Symbols: MEE47 | Protein of unknown function (DUF688)
| chr4:405673-407142 REVERSE LENGTH=1242
Length=1242
Score = 1249 bits (676), Expect = 0.0
Identities = 772/818 (94%), Gaps = 7/818 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTGAAAAAGAAACAGAGCAAGAAGGAAACTT-ATCAGTAATGATACTTCCGGT 59
||||||||||| ||||||||||| |||||||||||||| | ||||||||| |||||||||
Sbjct 56 ATGGAAGCTGAGAAAGAAACAGAACAAGAAGGAAACTTGA-CAGTAATGAAACTTCCGGT 114
Query 60 GTTACCAGTTAAACCCAACACTCACAGCCATTCTATGTCATCACCTATTCACAGTTCCAT 119
||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 115 GTTACCAACTAAACCCAACACTCACAGCCACTCTATGTCATCACCAATTCACAGTTCCAT 174
Query 120 ATCAGCTTCAG-TCCCATTTAGCTGGGAAGAAGAGCCTGGCAAGCCCAAGCAACActctt 178
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATCAGCTTCAGTTCCC-TTTAGCTGGGAAGAAGAGCCTGGCAAGCCCAAGCAACACTCTA 233
Query 179 cttcttcttcctcttcctcctcttcctcaccattaactacttattcttcatctccttTTG 238
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 234 CTTCTTCTTCCTCCTCTTCCTCTTCCTCACCATTAACTTCTTATTCTTCATCTCCTTTTG 293
Query 239 AAACCCACAAGTCCTTGGAGCTACCACCAAGGCTTCACTTACTTGAAAAAGATGGAGGAT 298
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAACTCACAAGTCCTTAGAGCTACCACCAAGGCTTCACTTACTTGAAAAAGATGGAGGAT 353
Query 299 CAGTCACCAAACTTCACTCGCCTATAACAGTCTTTGATGGACCTTATAGCATGACGAGAT 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 CAGTAACCAAACTTCACTCGCCTATAACAGTCTTTGATGGACCTTATAGCATGACGACAT 413
Query 359 CAAAAAGGATGGATTCACCTTCCTTTAGGATGACGGTGAAAGGAAGTGCTGATTGTTATG 418
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 414 CAAAAAGGATGGATTCACCTTCCTTTAGGATGATGGTGAAAGGTAGTGCTGATTGTTATG 473
Query 419 GGTCTTTCAGGAGTGACATCTATGGTGATTTAGAGGATGTGGAAGTGGACTCTAAGCAGC 478
|||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 474 GGTCTTTCAGGAGTGATATCGATGGTGATTTAGAGGATTTGGAAGTGGGCTCTAAGCAGC 533
Query 479 AGGAGAACTTGAGTAGTGTCTCTTTGGCTATTGTAAAGAAGCGAGGGAGATTAGGGTTTT 538
|||||||||||||||||| |||||||||| |||| |||||| ||||||||||||||||||
Sbjct 534 AGGAGAACTTGAGTAGTGGCTCTTTGGCTGTTGTGAAGAAGAGAGGGAGATTAGGGTTTT 593
Query 539 TTGGGTTTAGGAGGAGGAGAGCCTTGAAAGGAAAAACAGAGTTTGGTAGAGGTAGTTATG 598
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 594 TTGGGTTTAGGAGGAGGAGAGCATTGAAAGGGAAAACAGAGTTTGGTAGAGGTAGTTATG 653
Query 599 TGTTTCCTTCTTCTGTAGACAGAGAGAGTGGATACAGCagaaaagaagaggaagaagaaa 658
|||| || |||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 654 TGTTCCCATCTTCTGTAGACAGAGAGAGTGAATACAGTAGAAAGGAAGAGGAAGAAGAAA 713
Query 659 aagaagacaaaagGTTAGGTTATGGTGATGGTGATGGTATTAGTTGCAGCCAAAGCAGCA 718
|||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 714 AAGAAGACAAAAGGTTTGGTTATGATGATACTGATGGTATTAGTTGCAGCCAAAGCAGCA 773
Query 719 GGTTTTGTGAAGTGACGATGATCTCAAGCATTAGCAGAACAGGGAGCTTCTCTACTCTGC 778
|||||||||| |||| | ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 774 GGTTTTGTGATGTGA--A-GATCTCAAGCATTAGTAGAACAGGCAGCTTCTCTACTCTGC 830
Query 779 CTGCACCACCTTCTTCTTCTTCAAAGTCTCACTTTTGG 816
||||||||||||||||||||||||||||||||||||||
Sbjct 831 CTGCACCACCTTCTTCTTCTTCAAAGTCTCACTTTTGG 868
> AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:7476087-7476869 FORWARD LENGTH=783
Length=783
Score = 100 bits (54), Expect = 4e-20
Identities = 100/122 (82%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 1056 CAACACCAAGTTTTGTTATTACAACAACTACAGCTTAG-CACAGCCTAGGTACTTGTGTA 1114
|||||||||||||||||||||||||||||||||||| | | |||||||| ||||| || |
Sbjct 138 CAACACCAAGTTTTGTTATTACAACAACTACAGCTT-GTCTCAGCCTAGATACTTCTGCA 196
Query 1115 AGTCTTGTCGGAGATATTGGACTGAA-GGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGA 1173
|| ||| || | || ||||| ||| || || |||||||| ||| | || ||||| |||
Sbjct 197 AGGGTTGCCGTCGTTACTGGAC-GAAAGGCGGTTCTCTCCGCAACATTCCTGTAGGTGGA 255
Query 1174 GG 1175
||
Sbjct 256 GG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5