BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg327685 Length=1017 Score E Sequences producing significant alignments: (Bits) Value AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 326 3e-88 AT5G36200.1 | Symbols: | F-box and associated interaction doma... 244 1e-63 AT3G24580.1 | Symbols: | F-box and associated interaction doma... 100 2e-20 AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 78.7 1e-13 AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 69.4 6e-11 > AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | chr2:12054736-12056452 REVERSE LENGTH=1717 Length=1717 Score = 326 bits (176), Expect = 3e-88 Identities = 597/783 (76%), Gaps = 97/783 (12%) Strand=Plus/Plus Query 246 ACCCAGAAATTCTTATC-A-CA-AA-TG-G-GACAGGTACGCTCTCGGATACGAGACCAA 299 ||| |||||||| |||| | || || || | || | |||||||||||||||||||| || Sbjct 831 ACCTAGAAATTC-TATCTACCACAAGTGCGTGA-A-GTACGCTCTCGGATACGAGA--AA 885 Query 300 CAAGAATTACTCGAAAGTCTTGAGATTTGTTAAT-AATCACGACCCGAAC-GTGAATCAC 357 ||||| | | | ||| |||||||||| || ||| | | || || | || | || Sbjct 886 -AAGAA-T-CAC-AAAATCTTGAGATTCGTGAATGAGT-ACTTGGAGACCAGT-AGGGAC 939 Query 358 CGAATTTGTGAGTTTGAAATCTAC--TCTA-A-TTC--TTCATGGAAGGTTC-TTGATGA 410 |||||| ||||| || | || ||| | || | | | ||||||| ||| || ||||||| Sbjct 940 CGAATTCGTGAGCTTCAGATTTACAGTTTATACTCCAATTCATGGGAGG-TCATTGATGA 998 Query 411 TCTCAATCTGGACTGGGCTATATCGTTTAATCACCGTGGCTTGTCTCTAAAGGGCAACAC 470 | ||| || |||||| ||| | || || ||| ||||| ||||||||||||| ||||| Sbjct 999 TTTCACTCCAGACTGGTATATTTTGTACAAACACAGTGGCGTGTCTCTAAAGGGAAACAC 1058 Query 471 TTATTGGTATG--CTCGACAGAAGAT-CGACTTAGATGGTCCTCCTCCAGTCATAAGAGA 527 ||| ||||||| || || || |||| | | || ||||| || ||| || | ||| Sbjct 1059 TTACTGGTATGCCCTAGA-AG-AGATCCCA-TTTCATGGT-CT--ACCA-TC--ACTAGA 1109 Query 528 TCTCCCTGATTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGCTTCTGCC 587 || ||||||||| ||||| || ||||| ||| | | ||||||| ||||| |||||| Sbjct 1110 TCACCCTGATTTTCTACTATCCTTTGA-TTT-----C-A-AGATTTGAACCGCGTCTGCC 1161 Query 588 TCTGCCTTTCC-ACGCTTTCTTTGGAGATACTGTCACTCTTTCTAGTGTTAGAGAAAAGC 646 ||||||||||| | || | |||||||||||||| || ||| |||||||||||||| ||| Sbjct 1162 TCTGCCTTTCCGA-GCCGTATTTGGAGATACTGTGACGCTTGCTAGTGTTAGAGAAGAGC 1220 Query 647 AGCTTGCCGTGCTGTTTCAGAAATCTGGTGTACATGGATACACCGTCAAGATATGGATTA 706 ||||||| |||||||||| | | || | | || | |||| |||||||||||| Sbjct 1221 AGCTTGCGGTGCTGTTTC----A-CCGG-G--C----ATCCGTCGTCGAGATATGGATTA 1268 Query 707 GTACTAAGATTGAGCCCAATGCAGTGTCGTGGGGAAGCAGCTTGTTCTTAGCTGTTGATA 766 || |||||||||||| ||||||||||||| || |||| |||||| || |||||||||| Sbjct 1269 CTAATAAGATTGAGCCTAATGCAGTGTCGT--GG-AGCAACTTGTTATTTGCTGTTGATA 1325 Query 767 TGAAACCACTCACTGG----T--TTT-C----G-CGCTAGCAGTTTCTTCGTTGACGAGG 814 |||||||| || |||| | ||| | | || ||| ||||||||||||||||||| Sbjct 1326 TGAAACCAGTCGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAGTTTCTTCGTTGACGAGG 1385 Query 815 AGAAGAACGTCGCTGTGGTTCTTGAT-AA-AGACAGT-G------GT-A-AAT----CTC 859 ||||||| ||||| || ||||||||| || ||| | | | || | | ||| Sbjct 1386 AGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAGACAAATGTCACCTTCCCGCTC 1445 Query 860 GCAACATTGCTTACATCATTGGAAAGAATGG-ATACTTGA-AACAAGTGGATCTTGGTGA 917 |||| |||||||||||||||||||| ||||| || ||||| | ||||||||||||| || Sbjct 1446 GCAATATTGCTTACATCATTGGAAATAATGGAAT-CTTGAGTA-AAGTGGATCTTGGCGA 1503 Query 918 ATCTAGAAACCAA-TTCTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCTCTGCAAA 976 ||||||| | ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1504 ATCTAGAGA-CAAGTTTTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCAGTGCAAA 1562 Query 977 TCC 979 ||| Sbjct 1563 TCC 1565 > AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14244106-14246296 REVERSE LENGTH=1416 Length=1416 Score = 244 bits (132), Expect = 1e-63 Identities = 379/489 (78%), Gaps = 53/489 (11%) Strand=Plus/Plus Query 523 AGA-GAT-CTCCCTGATTTCCT-ACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCG 579 ||| ||| || ||||| ||| | | ||| |||||| |||||||| ||||||||||||||| Sbjct 708 AGATGATCCT-CCTGACTTCTTGA-TCTGTTTTGACTTTACAACAGAGAGATTTGGACCG 765 Query 580 CTTCTGC-CTCTG-CCTTTCCACGCTTTC-TT-TGGA-GATACTGTCACTCTTTCTAGTG 634 | ||| | | ||| ||||| || || || || | || |||||||| | ||| ||||||| Sbjct 766 CGTCTTCAC-CTGCCCTTT-CA--CTCTCATTCT-GATGATACTGTGATTCTCTCTAGTG 820 Query 635 TTAGAGAA-AAGCAGCTTGCCGTGCTGTTTCAG-AAATCTGGTGTACATGGATACACCGT 692 |||||||| || |||||||| ||| || || || || | | | ||||| | | Sbjct 821 TTAGAGAAGAA-CAGCTTGCGGTGTTGATTAAGCGCTTC-GAT-T-TATGGA-GGA---T 872 Query 693 CAAGATATGGATTA-GTACTAAGATTGAGCCCAATGCA-GTGTCGTGGGGAAGC-AGCTT 749 |||| ||| ||| | |||||||||||||| || | | || || | |||| | || || Sbjct 873 GGAGATTTGGGTTACG-ACTAAGATTGAGCCTAA-GGAGGTCTCAT--GGAA-CAAG-TT 926 Query 750 GTTCTTAGCTGTTGATATGAAACCAC---TCACTGGTTTTC-G---CGCT-A-G-CAGTT 799 ||||||||| |||||||||| ||||| |||||| ||||| | | | | | |||| Sbjct 927 GTTCTTAGCGGTTGATATGATACCACTGATCACTGCTTTTCAGTTTTG-TAATGTGAGTT 985 Query 800 TCTTCGTTGACGAGGAGAAGAACGTCGCT-GTGGTTCTTGATAAAGACAGTGGTAAAT-C 857 | ||| |||||||| ||||||| |||| | |||||||||| |||||| ||| | ||| | Sbjct 986 TTTTCATTGACGAGAAGAAGAATGTCG-TCGTGGTTCTTGGTAAAGA-TGTGTTGAATAC 1043 Query 858 TCGCAACATTGCTTACATCATTGGAAA-GAATGGATACTTGAAACAAGTGGATCTTGGTG 916 || ||||| ||| | || |||||||| | |||||||||| ||||||||||||||||| | Sbjct 1044 ACGAAACATAGCTAATATTATTGGAAATG-ATGGATACTTTAAACAAGTGGATCTTGGAG 1102 Query 917 AATCTAGAAACCAAT-TCTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCTCTGCAA 975 |||||| |||| ||| | |||||||||||||||||||||||||||||||| || ||||| Sbjct 1103 AATCTACAAACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161 Query 976 ATCCAGCAA 984 ||| ||||| Sbjct 1162 ATCAAGCAA 1170 > AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8969162-8970298 FORWARD LENGTH=1137 Length=1137 Score = 100 bits (54), Expect = 2e-20 Identities = 338/465 (73%), Gaps = 60/465 (13%) Strand=Plus/Plus Query 537 TTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTT-GGACCGC-TTCTGCCTCTGCC- 593 |||| || ||| ||||||||| |||| ||||||||| || ||| || | |||||||| Sbjct 681 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGG-TCGCGTT-TACCTCTGCCG 738 Query 594 TTTCCACG-C-TTTCTTTGGAGATACTGTCACTCTTTCTAGTGTTAGAGAAAAGCAGCTT 651 | || | | | | ||| |||||| || | ||| ||||||||||||||| |||||||| Sbjct 739 AGT-CA-GCCGTGTGTTT-TAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTT 795 Query 652 GCCGTGCTGTTTCAGAAAT-CTGGTGTACA-TGGATACACCGTCAAGATATGGATTAGTA 709 || || | |||||| | || ||||| ||| | | | | |||| ||| | | | Sbjct 796 GCTGTTTTATTTCAG---TGCTCAAGTACATTGG--AGA-TG-C-AGATCTGGGTAACAA 847 Query 710 CTAAGATTGAGCCCAATGCAGTGTCGTGGGGA-AGC-AGCTTGTTCTTAGCTGTTGATAT 767 | || |||||||||||||| |||| || || | ||| || ||||||||||||| ||||| Sbjct 848 CCAAAATTGAGCCCAATGCGGTGTTGT-GGAACAGCAAG-GTGTTCTTAGCTGTGGATAT 905 Query 768 GAAAC-CAC-TCA----CTGGTT----TTCGCGC-TAGCAGTTTCTTCGTTGACGAGGAG 816 | || ||| | | | | || || | || | | |||||||| | ||||||||| Sbjct 906 G-CACTCACTTAAGTTTCAGTTTCAAGTTAGAGCTTCG-AGTTTCTTTATCGACGAGGAG 963 Query 817 AAGA-ACGTCGCTGTGGTTCTTGATAAAG----AC---A-GT-G-GTAAATCTCGCAACA 865 |||| | || | ||| ||| ||||||||| || | | | || |||||||||| Sbjct 964 AAGAGA-GTTGTTGTTGTTTTTGATAAAGAAAAACGTTATTTAGCGT-CCTCTCGCAACA 1021 Query 866 TTGCTTACATCATTGGAAAGAATGGATA-CTTGAAACAAGTGGATCTTGGTGAA--TCTA 922 ||||||||| ||||| | ||||| | || | |||||||||| ||| | ||| ||| Sbjct 1022 AAGCTTACATCGTTGGAGTGGATGGA-ACCTGGGAACAAGTGGACCTT-G-GAATGTCT- 1077 Query 923 G-AAACCAATTCTG-TTACCCACTTGTGTGCTCTTATGTTCCAAG 965 | | || |||| || |||||||||||||||||||||||||||||| Sbjct 1078 GTAGACAAATT-TGTTTACCCACTTGTGTGCTCTTATGTTCCAAG 1121 > AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833 REVERSE LENGTH=1776 Length=1776 Score = 78.7 bits (42), Expect = 1e-13 Identities = 98/124 (79%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 534 TGATTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGCTTCTGCCTCTGCC 593 |||||| |||| | ||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 1200 TGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCC 1259 Query 594 -TTTCCACGCTTTCTTT--GGAGATACT-GTCACTCTTTCTAGTGTTAGAGAAAAGCAGC 649 ||| || || |||| || |||||| | ||||| ||| ||||| |||| || | | Sbjct 1260 GTTTAAACA-TT-CTTTTAGG-GATACTTGG-ACTCTATCTTCTGTTAAAGAAGAGAAAC 1315 Query 650 TTGC 653 |||| Sbjct 1316 TTGC 1319 > AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508 FORWARD LENGTH=2038 Length=2038 Score = 69.4 bits (37), Expect = 6e-11 Identities = 51/57 (89%), Gaps = 3/57 (5%) Strand=Plus/Plus Query 542 TACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGC-TTCTGCCTCTGCC-TTT 596 |||| | |||||||||||||||||||||||||||||||| || || ||||||| ||| Sbjct 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTT-TGTCTCTGCCGTTT 1612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49832273824 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5