BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327685
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 326 3e-88
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 244 1e-63
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 100 2e-20
AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 78.7 1e-13
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 69.4 6e-11
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 326 bits (176), Expect = 3e-88
Identities = 597/783 (76%), Gaps = 97/783 (12%)
Strand=Plus/Plus
Query 246 ACCCAGAAATTCTTATC-A-CA-AA-TG-G-GACAGGTACGCTCTCGGATACGAGACCAA 299
||| |||||||| |||| | || || || | || | |||||||||||||||||||| ||
Sbjct 831 ACCTAGAAATTC-TATCTACCACAAGTGCGTGA-A-GTACGCTCTCGGATACGAGA--AA 885
Query 300 CAAGAATTACTCGAAAGTCTTGAGATTTGTTAAT-AATCACGACCCGAAC-GTGAATCAC 357
||||| | | | ||| |||||||||| || ||| | | || || | || | ||
Sbjct 886 -AAGAA-T-CAC-AAAATCTTGAGATTCGTGAATGAGT-ACTTGGAGACCAGT-AGGGAC 939
Query 358 CGAATTTGTGAGTTTGAAATCTAC--TCTA-A-TTC--TTCATGGAAGGTTC-TTGATGA 410
|||||| ||||| || | || ||| | || | | | ||||||| ||| || |||||||
Sbjct 940 CGAATTCGTGAGCTTCAGATTTACAGTTTATACTCCAATTCATGGGAGG-TCATTGATGA 998
Query 411 TCTCAATCTGGACTGGGCTATATCGTTTAATCACCGTGGCTTGTCTCTAAAGGGCAACAC 470
| ||| || |||||| ||| | || || ||| ||||| ||||||||||||| |||||
Sbjct 999 TTTCACTCCAGACTGGTATATTTTGTACAAACACAGTGGCGTGTCTCTAAAGGGAAACAC 1058
Query 471 TTATTGGTATG--CTCGACAGAAGAT-CGACTTAGATGGTCCTCCTCCAGTCATAAGAGA 527
||| ||||||| || || || |||| | | || ||||| || ||| || | |||
Sbjct 1059 TTACTGGTATGCCCTAGA-AG-AGATCCCA-TTTCATGGT-CT--ACCA-TC--ACTAGA 1109
Query 528 TCTCCCTGATTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGCTTCTGCC 587
|| ||||||||| ||||| || ||||| ||| | | ||||||| ||||| ||||||
Sbjct 1110 TCACCCTGATTTTCTACTATCCTTTGA-TTT-----C-A-AGATTTGAACCGCGTCTGCC 1161
Query 588 TCTGCCTTTCC-ACGCTTTCTTTGGAGATACTGTCACTCTTTCTAGTGTTAGAGAAAAGC 646
||||||||||| | || | |||||||||||||| || ||| |||||||||||||| |||
Sbjct 1162 TCTGCCTTTCCGA-GCCGTATTTGGAGATACTGTGACGCTTGCTAGTGTTAGAGAAGAGC 1220
Query 647 AGCTTGCCGTGCTGTTTCAGAAATCTGGTGTACATGGATACACCGTCAAGATATGGATTA 706
||||||| |||||||||| | | || | | || | |||| ||||||||||||
Sbjct 1221 AGCTTGCGGTGCTGTTTC----A-CCGG-G--C----ATCCGTCGTCGAGATATGGATTA 1268
Query 707 GTACTAAGATTGAGCCCAATGCAGTGTCGTGGGGAAGCAGCTTGTTCTTAGCTGTTGATA 766
|| |||||||||||| ||||||||||||| || |||| |||||| || ||||||||||
Sbjct 1269 CTAATAAGATTGAGCCTAATGCAGTGTCGT--GG-AGCAACTTGTTATTTGCTGTTGATA 1325
Query 767 TGAAACCACTCACTGG----T--TTT-C----G-CGCTAGCAGTTTCTTCGTTGACGAGG 814
|||||||| || |||| | ||| | | || ||| |||||||||||||||||||
Sbjct 1326 TGAAACCAGTCGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAGTTTCTTCGTTGACGAGG 1385
Query 815 AGAAGAACGTCGCTGTGGTTCTTGAT-AA-AGACAGT-G------GT-A-AAT----CTC 859
||||||| ||||| || ||||||||| || ||| | | | || | | |||
Sbjct 1386 AGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAGACAAATGTCACCTTCCCGCTC 1445
Query 860 GCAACATTGCTTACATCATTGGAAAGAATGG-ATACTTGA-AACAAGTGGATCTTGGTGA 917
|||| |||||||||||||||||||| ||||| || ||||| | ||||||||||||| ||
Sbjct 1446 GCAATATTGCTTACATCATTGGAAATAATGGAAT-CTTGAGTA-AAGTGGATCTTGGCGA 1503
Query 918 ATCTAGAAACCAA-TTCTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCTCTGCAAA 976
||||||| | ||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1504 ATCTAGAGA-CAAGTTTTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCAGTGCAAA 1562
Query 977 TCC 979
|||
Sbjct 1563 TCC 1565
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 244 bits (132), Expect = 1e-63
Identities = 379/489 (78%), Gaps = 53/489 (11%)
Strand=Plus/Plus
Query 523 AGA-GAT-CTCCCTGATTTCCT-ACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCG 579
||| ||| || ||||| ||| | | ||| |||||| |||||||| |||||||||||||||
Sbjct 708 AGATGATCCT-CCTGACTTCTTGA-TCTGTTTTGACTTTACAACAGAGAGATTTGGACCG 765
Query 580 CTTCTGC-CTCTG-CCTTTCCACGCTTTC-TT-TGGA-GATACTGTCACTCTTTCTAGTG 634
| ||| | | ||| ||||| || || || || | || |||||||| | ||| |||||||
Sbjct 766 CGTCTTCAC-CTGCCCTTT-CA--CTCTCATTCT-GATGATACTGTGATTCTCTCTAGTG 820
Query 635 TTAGAGAA-AAGCAGCTTGCCGTGCTGTTTCAG-AAATCTGGTGTACATGGATACACCGT 692
|||||||| || |||||||| ||| || || || || | | | ||||| | |
Sbjct 821 TTAGAGAAGAA-CAGCTTGCGGTGTTGATTAAGCGCTTC-GAT-T-TATGGA-GGA---T 872
Query 693 CAAGATATGGATTA-GTACTAAGATTGAGCCCAATGCA-GTGTCGTGGGGAAGC-AGCTT 749
|||| ||| ||| | |||||||||||||| || | | || || | |||| | || ||
Sbjct 873 GGAGATTTGGGTTACG-ACTAAGATTGAGCCTAA-GGAGGTCTCAT--GGAA-CAAG-TT 926
Query 750 GTTCTTAGCTGTTGATATGAAACCAC---TCACTGGTTTTC-G---CGCT-A-G-CAGTT 799
||||||||| |||||||||| ||||| |||||| ||||| | | | | | ||||
Sbjct 927 GTTCTTAGCGGTTGATATGATACCACTGATCACTGCTTTTCAGTTTTG-TAATGTGAGTT 985
Query 800 TCTTCGTTGACGAGGAGAAGAACGTCGCT-GTGGTTCTTGATAAAGACAGTGGTAAAT-C 857
| ||| |||||||| ||||||| |||| | |||||||||| |||||| ||| | ||| |
Sbjct 986 TTTTCATTGACGAGAAGAAGAATGTCG-TCGTGGTTCTTGGTAAAGA-TGTGTTGAATAC 1043
Query 858 TCGCAACATTGCTTACATCATTGGAAA-GAATGGATACTTGAAACAAGTGGATCTTGGTG 916
|| ||||| ||| | || |||||||| | |||||||||| ||||||||||||||||| |
Sbjct 1044 ACGAAACATAGCTAATATTATTGGAAATG-ATGGATACTTTAAACAAGTGGATCTTGGAG 1102
Query 917 AATCTAGAAACCAAT-TCTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCTCTGCAA 975
|||||| |||| ||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 1103 AATCTACAAACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
Query 976 ATCCAGCAA 984
||| |||||
Sbjct 1162 ATCAAGCAA 1170
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 100 bits (54), Expect = 2e-20
Identities = 338/465 (73%), Gaps = 60/465 (13%)
Strand=Plus/Plus
Query 537 TTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTT-GGACCGC-TTCTGCCTCTGCC- 593
|||| || ||| ||||||||| |||| ||||||||| || ||| || | ||||||||
Sbjct 681 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGG-TCGCGTT-TACCTCTGCCG 738
Query 594 TTTCCACG-C-TTTCTTTGGAGATACTGTCACTCTTTCTAGTGTTAGAGAAAAGCAGCTT 651
| || | | | | ||| |||||| || | ||| ||||||||||||||| ||||||||
Sbjct 739 AGT-CA-GCCGTGTGTTT-TAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTT 795
Query 652 GCCGTGCTGTTTCAGAAAT-CTGGTGTACA-TGGATACACCGTCAAGATATGGATTAGTA 709
|| || | |||||| | || ||||| ||| | | | | |||| ||| | | |
Sbjct 796 GCTGTTTTATTTCAG---TGCTCAAGTACATTGG--AGA-TG-C-AGATCTGGGTAACAA 847
Query 710 CTAAGATTGAGCCCAATGCAGTGTCGTGGGGA-AGC-AGCTTGTTCTTAGCTGTTGATAT 767
| || |||||||||||||| |||| || || | ||| || ||||||||||||| |||||
Sbjct 848 CCAAAATTGAGCCCAATGCGGTGTTGT-GGAACAGCAAG-GTGTTCTTAGCTGTGGATAT 905
Query 768 GAAAC-CAC-TCA----CTGGTT----TTCGCGC-TAGCAGTTTCTTCGTTGACGAGGAG 816
| || ||| | | | | || || | || | | |||||||| | |||||||||
Sbjct 906 G-CACTCACTTAAGTTTCAGTTTCAAGTTAGAGCTTCG-AGTTTCTTTATCGACGAGGAG 963
Query 817 AAGA-ACGTCGCTGTGGTTCTTGATAAAG----AC---A-GT-G-GTAAATCTCGCAACA 865
|||| | || | ||| ||| ||||||||| || | | | || ||||||||||
Sbjct 964 AAGAGA-GTTGTTGTTGTTTTTGATAAAGAAAAACGTTATTTAGCGT-CCTCTCGCAACA 1021
Query 866 TTGCTTACATCATTGGAAAGAATGGATA-CTTGAAACAAGTGGATCTTGGTGAA--TCTA 922
||||||||| ||||| | ||||| | || | |||||||||| ||| | ||| |||
Sbjct 1022 AAGCTTACATCGTTGGAGTGGATGGA-ACCTGGGAACAAGTGGACCTT-G-GAATGTCT- 1077
Query 923 G-AAACCAATTCTG-TTACCCACTTGTGTGCTCTTATGTTCCAAG 965
| | || |||| || ||||||||||||||||||||||||||||||
Sbjct 1078 GTAGACAAATT-TGTTTACCCACTTGTGTGCTCTTATGTTCCAAG 1121
> AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833
REVERSE LENGTH=1776
Length=1776
Score = 78.7 bits (42), Expect = 1e-13
Identities = 98/124 (79%), Gaps = 8/124 (6%)
Strand=Plus/Plus
Query 534 TGATTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGCTTCTGCCTCTGCC 593
|||||| |||| | ||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 1200 TGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCC 1259
Query 594 -TTTCCACGCTTTCTTT--GGAGATACT-GTCACTCTTTCTAGTGTTAGAGAAAAGCAGC 649
||| || || |||| || |||||| | ||||| ||| ||||| |||| || | |
Sbjct 1260 GTTTAAACA-TT-CTTTTAGG-GATACTTGG-ACTCTATCTTCTGTTAAAGAAGAGAAAC 1315
Query 650 TTGC 653
||||
Sbjct 1316 TTGC 1319
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 69.4 bits (37), Expect = 6e-11
Identities = 51/57 (89%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 542 TACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGC-TTCTGCCTCTGCC-TTT 596
|||| | |||||||||||||||||||||||||||||||| || || ||||||| |||
Sbjct 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTT-TGTCTCTGCCGTTT 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5