BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327689
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:... 933 0.0
> AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357551-359194
FORWARD LENGTH=1062
Length=1062
Score = 933 bits (505), Expect = 0.0
Identities = 563/591 (95%), Gaps = 3/591 (1%)
Strand=Plus/Plus
Query 109 TATCTTGATGAGAACAAGAAGCTGATAATGGCGATTTTGGAAAATCAGAACCTCGGTAAA 168
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 209 TATCTTGATGAGAACAAGAAGCTGATAATGGCGATCTTGGAAAATCAGAACCTCGGTAAA 268
Query 169 CTTGCGGAATGTGCTCAGTATCAAGCTCTTCTCCAAAAGAATTTGATGTATCTCGCTGCA 228
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 269 CTTGCAGAATGTGCTCAGTATCAAGCTCTTCTCCAGAAGAATTTGATGTATCTCGCTGCA 328
Query 229 ATTGCGGATGCTCAACCTCAGCCACCACCAGCTACACTAACACCAGGAGCCATGACTCCT 288
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 329 ATTGCGGATGCTCAACCTCAGCCACCAGCAGCTACACTAACATCAGGAGCCATGACTCCC 388
Query 289 CAAGCAATGGCTCCTCATCCGTCAGCAATGCAGCCACCACCAAGCTACTTCATGCAGCAA 348
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 389 CAAGCAATGGCTCCTAATCCGTCATCAATGCAGCCACCACCAAGCTACTTCATGCAGCAA 448
Query 349 CATCAACAAGCTGTGGGAATGGCTCAACAAATACCTCCCGGGATTTTCCCTCCAAGAGGT 408
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 449 CAT---CAAGCTGTGGGAATGGCTCAACAAATACCTCCTGGGATTTTCCCTCCTAGAGGT 505
Query 409 CCATTGCAATTTGGTAGCCCGCATCAATTTCAGGATCCGCAGCAACAATTACATCAACAA 468
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 506 CCATTGCAATTTGGTAGCCCGCATCAGTTTCTGGATCCGCAGCAACAGTTACATCAACAA 565
Query 469 GCTATGCAAGGGCACATGGGGATCAGACCAATGGGTTTAAATAATAACAACGGACTGCAA 528
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 566 GCTATGCAAGGGCACATGGGGATTAGACCAATGGGTTTGAATAATAACAACGGACTGCAA 625
Query 529 CATCAAATGCACCACCAGGAAACGGCTCTTGGTACAAACAATGCGGGTCCAAACGATACT 588
||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| ||
Sbjct 626 CATCAAATGCACCACCATGAAACTGCTCTTGCCGCAAACAATGCGGGTCCTAACGATGCT 685
Query 589 AGTGGAGGAGGTAAACAGGATGGGACCAATATGCTCCAGAGTGGAGCTGATGGGCAAGGT 648
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 686 AGTGGAGGAGGTAAACCGGATGGGACCAATATGAGCCAGAGTGGAGCTGATGGGCAAGGT 745
Query 649 GGCTCAGCCGCTAGACATGGCGGTGGTGATGCAAAAACTGAAGGAAAATGA 699
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GGCTCAGCCGCTAGACATGGCGGTGGTGATGCAAAAACTGAAGGAAAATGA 796
Score = 126 bits (68), Expect = 2e-28
Identities = 80/85 (94%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 1 ATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTCATTTCCGCCCCACCAATA- 59
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 125 ATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTCATTTCCGCCC-ACCAATAA 183
Query 60 T--CACTACCGAACAGATCCAAAAG 82
| ||| ||||||||||||||||||
Sbjct 184 TATCACCACCGAACAGATCCAAAAG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5