BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327694
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00800.1 | Symbols: | transducin family protein / WD-40 rep... 3790 0.0
> AT4G00800.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:336945-345714 REVERSE LENGTH=6044
Length=6044
Score = 3790 bits (2052), Expect = 0.0
Identities = 2292/2408 (95%), Gaps = 16/2408 (1%)
Strand=Plus/Plus
Query 1 ATGGATACTGAAGCCACTTTAGATGTCCTAAGATATGCATTTGTAGAAAATGAAATGGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3482 ATGGATACTGAAGCCACTTTAGATGTCCTAAGATATGCATTTGTAGAAAATGAAATGGTG 3541
Query 61 AAGCATGAAAGTCACCTGCTGGAGTCCGGTGAAGTAAGTTTAGAGTCCAAGACTGATGGC 120
|||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 3542 AAGCATGAGAGTCACCTTCTGGAGTACGGTGAAGTAAGTGTAGAGTCCAAGACTGATGGC 3601
Query 121 AGTTTACCCGAAGTTAGCAACAATAGACTAATCCAGAATCTTATAGATGCTCTAGTTCAT 180
||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 3602 AGTTTACCCGAAGTTAGCAACGATATACTAATCCAGAATCTTGTAGATGCTCTAGTTCAT 3661
Query 181 GTTCTTGACGGGGGCTTAAGCAAGGCTGATGAATCTGGCGATCCAAATGATTCAAAATCA 240
|||| ||| ||||| ||||||| ||| | ||||||||||||| |||||||||||||
Sbjct 3662 GTTCCCGACTGGGGCGTAAGCAA---TGA-G--TCTGGCGATCCAATTGATTCAAAATCA 3715
Query 241 GATAAAAATTGGCCTTCCAAGGAGGATACAAGTCATCTATTTGAGTTTGTTGCATATTAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3716 GATAAAAATTGGCCTTCCAAGGAGGATACAAGTCATCTATTTGAGTTTGTTGCATATTAT 3775
Query 301 GCAGCACTTGGTAGAGTTAGTATTCCCAAGAGCGTATTGGCACAGATTTTAGATTACTTA 360
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 3776 GCAGCACGTGGTAGAGTGAGTATTTCCAAGAGCGTATTGGCACAGATTTTAGATTACTTA 3835
Query 361 ACATCAGATCACATTCTTCCAACTTATAACGTGTCTTCTAAAATGAGAGAGAACCAATTA 420
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3836 ACATCAGACCACATTCTTCCAACTTATAACGTGTCTTCTAAGATGAGAGAGAACCAATTA 3895
Query 421 CTAAACCTTCTGAAAGCTGTTCCGGAGACTGATTGGGATGTAGATGATGTAACACAGCTT 480
|||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||
Sbjct 3896 CTAAACCTTCTGAAAGCTGTCCCGGAGACTGATTGGGATGCAGATTATGTATCACAGCTT 3955
Query 481 TGTGAGAAAGCACATTTTTATCAGGTTTGTGGCTATATTCATATTATCGGTGGAAGGTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3956 TGTGAGAAAGCACATTTTTATCAGGTTTGTGGCTATATTCATATTATCGATCGAAGGTAC 4015
Query 541 GTTGCAGCTTTGGATAGCTACATGAAAGAGGCAGATGAACCCATACATTCGTTTTGTTAT 600
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 4016 GTTGCAGCTTTGGATAGCTACGTGAAAGAGGCAGATGAACCCATACATTTGTTTTGCTAT 4075
Query 601 GTGAACAAGATGCTGTCACAGTTGAGTGGAGATAAATTCACTGCCTTTCAATCTGCAGTT 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 4076 GTGAACAAGATGCTGTCACAGTTGAGTGGAGATGAATTCACTGCCTTTCAATCTGCAATA 4135
Query 661 ATTTCTAAGATTCCCGAGCTTCTTGAATTGAGCAGACAGGGAGCATTCTTCCTGATTA-T 719
||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
Sbjct 4136 ATTTCTAGGATTCCCGAGCTCCTTGATTTGAGCAGACAAGGAGCATTCTTCCTGATTATT 4195
Query 720 TGATAATTTGAAAGACAACATTACACGCATTCAAGAGCAGCTCCATTCTCATCCAAGAAG 779
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4196 TG-TAATTTGAAAGACACCATTAAACGCATTCAAGAGCAGCTCCATTCTCATCCAAGAAG 4254
Query 780 CTTGTTCCTGTATCTCAAGACTGTTATTGAGGTTCACTTGTCTGGGAGTCTTGATTTTTC 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4255 CTTGTTCCTGTATCTCAAGACTGTTATTGAGGTTTACTTGTCTGGGAGTCTTGATTTTTC 4314
Query 840 TCGTCTAAGAAAACATGAAGCTGTAGATAATTCGGGTGAAAACATTAGAAGGGAAATACC 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 4315 TCGTCTAAGAAAACATGAAGCTGTAGATAGCTCGGGTGAAAACATTAGAAGGGATATACC 4374
Query 900 CAAAGAGGCGGAGATTTATTTGGAAGGACTCAATGGCTTTCCCAAATTCATCCAAGATAA 959
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4375 CAAAGAGGCGAAGATTTATTTGGAAGGACTCAATGACTTTCCCAAATTCATCCAAGATAA 4434
Query 960 TCCAGTCAATGTGACTGATGACATGATTGAGCTTTACTTGGAGCTACTATGCAAGTACGA 1019
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 4435 TCCAGTCAATGTGACTGATGACATGATTGAGCTTTACGTGGAGCTATTATGCAAGTACGA 4494
Query 1020 ACCGAAGTCCGTCTTGAGATTTCTGGAAACCTTTGACAGCTACAGGGTGGAACACTGTCT 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4495 ACCGAAGTCCGTCTTGAAATTTCTGGAAACCTTTGACAGCTACAGGGTGGAACACTGTCT 4554
Query 1080 ACGCCTCTGCCAGGAATATGGAATTGTAGATGCAGCAGCATTTCTCTTGGAGAGGGTGGG 1139
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 4555 TCGCCTCTGCCAGGAATATGGAATTGTCGATGCAGCAGCATTTCTCTTGGAAAGGGTGGG 4614
Query 1140 TGATGCAGCAAGTGCTTTGTCACTTACACTCTCTGGACTCAATGAAAAATATGTCGAGCT 1199
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4615 TGATGCAGGAAGTGCTTTGTCACTTACACTCTCTGGACTCAATGAAAAATATGTCGAGCT 4674
Query 1200 TGAAATTGCAGTGGAATGCCTAATGTCAGAAATGAAATTGGGTGCTAGCGAAGGAGCCAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4675 TGAAATTGCAGTGGAATGCCTAATGTCAGAAATGAAATTGGGTGCTAGCGAAGGAGCCAG 4734
Query 1260 -TGTGGAACAATTCAGTAGTGCTTTAGAGTTGAAAGAGGTACATGACATACAAGGTGTTC 1318
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4735 CT-TGGAACACTTCAGTAGTGCCTTAGAGTTGAAAGAGGTACATGACATACAAGGTGTTT 4793
Query 1319 TGCAAGCCTGTGTAGGATTGTGTCAGCGCAACACTCCTCGTCTTAATCCGGAGGAGTCAG 1378
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4794 TGCAAGCCTGTATAGGATTGTGTCAGCGCAACACTCCTCGTCTTAATCCGGAGGAGTCAG 4853
Query 1379 AGATACTTTGGTTTCGCTTTCTTGACACTTTCTGTGAACCTTTGATGGATTCATATCGGG 1438
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 4854 AGATACTCTGGTTTCGCTTCCTTGACACTTTCTGTGAACCTTTGATGGAATCATACCGGG 4913
Query 1439 AACCGAGGAACACCGATGGAAGAAACAAAGGTCCTTTAGGTGTTAAATCATTGGAACTTC 1498
|||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 4914 AACCGAAGAACACCGATGGAATAAACAAAGGTTCTTTAGGTGTTAAATCATTGGAACGTC 4973
Query 1499 ATGTCAATGAATCAGACGTTGCAATTAAGTGGAGGATTCCAAGATCTGATACGGCGG-GT 1557
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 4974 ATGTCAATGAATCAGATGTTGCAATTAAGTGGAGGATTCCAAGATCTGATACGGCAGCG- 5032
Query 1558 ACACACATCCTGAGAAAGCTCATATCTCAATTTATCAAAGAGATTGTTGAAGGAATGATA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5033 ACACACATCCTGAGAAAGCTCATATCTCAATTTATCAAAGAGATTGTTGAAGGAATGATA 5092
Query 1618 GGATATGTTCGTCTTCCAACAATCATGACAAAACTCCTCTCCGAAAACGGTACTCAAGAG 1677
|||||||||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 5093 GGATATGTTCGTCTTCCAACAATCATGACAAAACTCCTTTCTGACAATGGTACTCAAGAG 5152
Query 1678 TTTGGTGATTTTAAACTTACAATATTGGGAATGCTTGGAACATATGGCTTCGAACGGAGA 1737
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 5153 TTTGGTGATTTTAAACTTACAATACTGGGAATGCTTGGAACATATGGCTTCGAACGGAGA 5212
Query 1738 ATACTGGATACTGCAAAGTCTTTAATCGAAGATGATACATTCTACTCCATGAACTTACTC 1797
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5213 ATACTAGATACTGCAAAGTCTTTAATCGAAGATGATACATTCTACTCCATGAACTTACTT 5272
Query 1798 AAGAAAGGTGCTTCTCACGGGTATGCACCAAGAAGTTTGCTTTGTTGTATATGCAGTTGC 1857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5273 AAGAAAGGTGCTTCTCACGGGTATGCACCCAGAAGTTTGCTTTGTTGTATATGCAGTTGC 5332
Query 1858 CCTCTCACCAAGACATTTTCTGCTCTGCGTGTGCGTGTTTTCAACTGTGGCCACGCAACA 1917
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5333 CCTCTCACCAAGACATTTTCTGCTCTTCGTGTACGTGTTTTCAACTGTGGCCACGCAACA 5392
Query 1918 CATCTTCAATGTGAACCTTTAGAGAATGAGATGTCGTCATCGTCATCATCAATTCATGTC 1977
||||||||||||||||||| ||||||||||| ||| ||||| | |||||||||||||||
Sbjct 5393 CATCTTCAATGTGAACCTTCAGAGAATGAGACGTCAACATCGGCGTCATCAATTCATGTC 5452
Query 1978 TCCTCGTCAGGCTGTCCTGTCTGTATGACCAAGAAGACGAGCAAAAGCTCTGCTAAA-GG 2036
||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 5453 TCCTCATCAGGCTGTCCTGTCTGTATGACCAAGAAGACCAGCAAAAGCTCTT-TAAAAGG 5511
Query 2037 TAAATCGTTCTACCTAGATTATGGACTGATAAGCACAATTTCGTCAAATGCCGGGTCTTC 2096
|||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 5512 TAAATCGTTCTACCGAGATTATGGACTGATAAGCACAGTTTCGTCAAACGCCGGGTCTTC 5571
Query 2097 ACAACGTGCTTCGCCTTACTCACACGAGAATGAAACGAGCGATCATTCTCATAGCCAGCA 2156
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 5572 ACAACGTGCTTCGCCTTACTCACACGAGAATGAAATGAGCGATCATTCTCATAACCAACA 5631
Query 2157 TA-TATCACGGTTTGAAATCTTAACCAACCTTCAGAAAGATCAGAGATTGGTACAGATAG 2215
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5632 -ACTTTCACGGTTTGAAATCTTAACCAACCTTCAGAAAGATCAGAGATTGGTACAGATAG 5690
Query 2216 AGAGCTTGCCTCGATTAAGGCTTGCACCTCCGGCCGTGTACCACGAAAAAGTGAGCAGAC 2275
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 5691 AGAGCTTGCCTCGATTAAGGCTTGCACCTCCGGCTGTGTACCATGAAAAAGTGAGCAGGC 5750
Query 2276 TCTCGGGTTTTACCCCGAAAGAGAGTAGCGGTAAAGACACAAAACCTGTAAAAACCGGAC 2335
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 5751 TCTCGGGTTTTACCCCGGGAGAGAGTAGCGGTAAAGACACAAAACCTGTAAAAACCGGAC 5810
Query 2336 AGGGTAAGAAACCGAAAGCAAAAGGATCGATGTTTCGGTCAAGATTTGGTAAGTCTTTTC 2395
|||||||||| |||||| ||||||||||||| ||| |||||| ||||||||| |||||||
Sbjct 5811 AGGGTAAGAAGCCGAAAACAAAAGGATCGATATTTGGGTCAACATTTGGTAAATCTTTTC 5870
Query 2396 TTTTATAG 2403
||| ||||
Sbjct 5871 TTTAATAG 5878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119326695465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5