BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327720

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   366    4e-101


> AT4G00530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; 
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G01725.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr4:232928-233645 REVERSE LENGTH=371
Length=371

 Score =  366 bits (198),  Expect = 4e-101
 Identities = 210/216 (97%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  1    ATGAATCCTCAAACCGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  54   ATGAATCCTCAAACCGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCT  113

Query  61   TCCTACTTTCTCTTAACTGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCATCAAA  120
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  TCCTACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCATCAAA  173

Query  121  AGGAAGATATTATCAGCACAAGATTCTGTCAAGCAATTCATCTTTGGACCAAAGGGAGGG  180
            |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  174  AGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTGGACCAAAGGGAGAG  233

Query  181  CCATCTGGGAAAGAACAATCTGACACTGCTAAATGA  216
            |||||||| ||||||| |||||||||||||||||||
Sbjct  234  CCATCTGGTAAAGAACCATCTGACACTGCTAAATGA  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5