BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327725
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (b... 2281 0.0
> AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr4:216812-219743
REVERSE LENGTH=1856
Length=1856
Score = 2281 bits (1235), Expect = 0.0
Identities = 1470/1578 (93%), Gaps = 37/1578 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTTGACAATGGCTGATGGTGTAGAAGCTCCAGGAGGAAGAAGTAAAAGACAAAAC 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 60 ATGTCTTTGACAATGGCTGATGGTGTAGAAGCTGCAGCAGGAAGAAGTAAAAGACAAAAC 119
Query 61 AGCTTATTAAGAAAGCAACTTGCTTTAGCTGTAAGAAGTGTTCAATGGAGCTACGCAATC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCTTATTAAGAAAACAACTTGCTTTAGCTGTAAGAAGTGTTCAATGGAGCTACGCAATC 179
Query 121 TTCTGGTCGTCTTCACTTACTCAACCTGGGGTTGTGGAGTGGGGAGAAGGATGTTACAAT 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TTCTGGTCGTCTTCACTTACTCAACCTGGGGTTTTGGAGTGGGGAGAAGGATGTTACAAT 239
Query 181 GGTGATATGAAGAAGAGGAAGAAGAGTTACGAATCTCATTATAAATATGGTTTGCAGAGA 240
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 240 GGAGATATGAAGAAGAGGAAGAAGAGTTATGAATCTCATTATAAATATGGGTTGCAAAAA 299
Query 241 AGCAAGCAGCTTCGGAAACTTTATTTGTCTATGCTTGAAGGAGATAATGGTACTACTACT 300
|||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 300 AGCAAGGAGCTTCGGAAACTTTATTTGTCTATGCTTGAAGGAGACAGTGG---TACTACT 356
Query 301 GTTAGTACTACTCatgatgatcacaatgatgatgatgatgatAATTGTCGTCACAGTACA 360
|||||||||||||||||| ||| | | |||||||||||||||| | | |||||||||||
Sbjct 357 GTTAGTACTACTCATGATAATCTC-A--ATGATGATGATGATAA-T-T-GTCACAGTACA 410
Query 361 AGTATGATGCTGTCACCAGATGACCTCTCTGATGAAGAGTGGTACTATTTAGTCTCCATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGTATGATGCTGTCACCAGATGACCTCTCTGATGAAGAGTGGTACTATTTAGTCTCCATG 470
Query 421 TCCTATGTCTTCTCTCCTTCTCAATGTTTGCCTGGACGAGCTTCAGCGACGGGTGAGACC 480
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 471 TCCTATGTCTTCTCTCCTTCACAATGTTTGCCTGGAAGAGCTTCAGCGACGGGTGAGACC 530
Query 481 ATATGGCTCTGCAACGCTCAATACGCGGAGAACAAGCTCTTCTCTCGTTCTTTGTTAGC- 539
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 531 ATATGGCTCTGCAACGCTCAATATGCGGAGAACAAGCTCTTCTCTCGTTCTTTGTTAGCA 590
Query 540 --AA--G---------A-ACTGTTGTGTGTTTCCCTTACTTGGGCGGTGTGATTGAGCTG 585
|| | | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 591 AGAAGCGCATCAATTCAGACTGTTGTGTGTTTCCCTTACTTGGGCGGAGTCATTGAGCTG 650
Query 586 GGCGTCACTGAATTGATTTCGGAAGATCATAGTCTGCTTC-AACACGTAAAATCTTGCTT 644
|||||||||||||||||||| ||||| |||| ||||||| || || | |||||||||||
Sbjct 651 GGCGTCACTGAATTGATTTCAGAAGACCATAACCTGCTTCGAA-ACATCAAATCTTGCTT 709
Query 645 GTTGGAAATATCTGCACACCAAGACAACGATGATGAGAAGAAAATGGGA-ATTAAGATCA 703
| ||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||
Sbjct 710 GATGGAAATATCTGCACACCAAGACAACGATGACGAGAAGAAGAT-GGAGATTAAGATCA 768
Query 704 TTGAAGAGAAGCATCAGATTCCATTAGGTATTTCTGATGAAGACTTACATTACAAAAGAA 763
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 769 GTGAAGAGAAGCATCAGCTTCCATTAGGTATTTCTGATGAAGACTTGCATTACAAAAGAA 828
Query 764 CCATTTCAACAGTACTCAACTACGCCGCGGATAGATC-------CA-G-TAAGAACATTC 814
||||||||||||||||||||||| |||| |||||||| | | |||||||||||
Sbjct 829 CCATTTCAACAGTACTCAACTACTCCGCAGATAGATCAGGTAAGAACGATAAGAACATTC 888
Query 815 ATCACCGTCAACCAAGTACGGTTTCTTCTGATTCTGGCTCAAGTTTCTTGCGGTGGAAGC 874
||| ||||| |||| || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 889 GTCATCGTCAGCCAAATATTGTTACTTCTGAACCTGGCTCAAGTTTCTTGCGGTGGAAGC 948
Query 875 AATGTGAGCAGCCAGACTCGGGTTTTGTTCAGAAAAAACAGTCACAGAATGTTTTGCGGA 934
|||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 949 AATGTGAGCAGCAAGTCTCGGGTTTTGTTCAGAAAAAAAAGTCACAGAATGTGTTGCGGA 1008
Query 935 AGATATTGCATGATGTTCCATTGATGCACACAAAGAGGATGTTCCCAAGTCAGAAATCTG 994
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1009 AGATATTGCATGATGTCCCTTTGATGCACACAAAGAGAATGTTCCCAAGTCAGAACTCTG 1068
Query 995 GTCTGAATCAAGATGATCCTTCGGATACAAGAAAAGAGAACGAAAAGTTCAGTGTCCTTA 1054
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1069 GTCTGAATCAAGATGATCCTTCAGATAGAAGAAAAGAGAACGAAAAGTTCAGTGTCCTTA 1128
Query 1055 GAACTATGGTTCCCACTGTCAACGAGGTTGATAAAGAATCGATACTGAATAACACAATCA 1114
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1129 GAACTATGGTTCCCACTGTCAACGAGGTTGATAAAGAATCGATACTAAACAACACAATCA 1188
Query 1115 AGTACTTGCAAGAACTGGAGGCAAGAGTAGAAGAGCTAGAATCATGTATGGGATCAGTTA 1174
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1189 AGTACCTGCAAGAACTGGAGGCAAGAGTAGAAGAGCTAGAATCTTGTATGGGATCAGTTA 1248
Query 1175 ACTTCGTAGAAAGACAAAGAAAGACGCCGGAGAACCTTAACGACTCTGTGTTGATCGAAG 1234
| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1249 ATTTTGTAGAAAGACAAAGAAAGACGACAGAGAACCTTAACGACTCTGTGTTGATCGAAG 1308
Query 1235 AGACATCAGGGAACTACGATGATAGCACGAAGATCGATGGTAATTCAGGAGAAACCGAAC 1294
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1309 AGACATCAGGGAACTACGATGATAGCACGAAGATCGATGACAATTCAGGAGAAACCGAAC 1368
Query 1295 AAGTCACTGTTTCCAGAGATAAGACACATTTGAGAGTTAAACTCAAAGAAACAGAAGTTG 1354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AAGTCACTGTTTTCAGAGATAAGACACATTTGAGAGTTAAACTCAAAGAAACAGAAGTTG 1428
Query 1355 TGATCGAAGTAAGATGTTCTTACAGAGACTACATAGTTGCAGACATCATGGAAACTCTGA 1414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1429 TGATCGAAGTAAGATGTTCTTACAGAGACTACATAGTTGCGGACATCATGGAAACTCTGA 1488
Query 1415 GCAATCTTCACATGGATGCTTTCTCTGTTCGATCTCACACACTTAATAAGTTCCTCACAT 1474
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1489 GCAATCTTCACATGGATGCTTTCTCTGTTAGATCTCACACGCTCAATAAGTTCCTCACAT 1548
Query 1475 TGAATCTCAAGGCCAAGTTTCGTGGGGCTGCAGTTGCGTCCGTAGGAATGATCAAGCGAG 1534
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1549 TGAATCTCAAGGCCAAGTTTCGCGGGGCTGCAGTTGCGTCCGTAGGAATGATTAAGCGAG 1608
Query 1535 AGCTGAGAAGAATCATTG 1552
||||||||||| ||||||
Sbjct 1609 AGCTGAGAAGAGTCATTG 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5