BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327726
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00467.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 922 0.0
> AT4G00467.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr4:214846-216076 REVERSE LENGTH=609
Length=609
Score = 922 bits (499), Expect = 0.0
Identities = 575/612 (94%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAGA-GGATTATTGGAAGTATTTCTCGTTGATGCTCATGGAATCACACACACAAA 59
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAGAGGGA-TATTGGAAGTATTTCTCATTGATGCTCATGGAATCACACACACAAA 59
Query 60 TTTTATTGGAAGTCCTGTGTATTATGTGCTCTTACAATGTGGGATAAAGGAATACCGTAG 119
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 TTTTATCGGAACTCCTGTGTATTATGTGCTCTTACAATGTGGGACAAAGGAATACCGTAG 119
Query 120 CAAAATGTCGAAAGGTGATAATGACAATGCATTGTGGAACCAAAAGTTTGTTTTCGATTT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAATGTCAAAAGGTGATAATGACAATGCATTGTGGAACCAAAAGTTTGTTTTCGATTT 179
Query 180 CCCAATGTCTCAATGGAAGAAGCTGACCTACATCAAATTTAGAATCATGGACAAAGAGCT 239
||| ||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 180 CCCGATGTCTCAATGGAAGAAACTGACCTATATCAAATTAAGAATCTTGGACAAAGAGCT 239
Query 240 CTTCAAAGATGGTGGATTTGTCGGTGAAACCATAATTCATCTTGGAGGGATAATAACCGA 299
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 240 CTTCAATGATGGTGGATTTGTCGGTGAAACCATAATTCATCTCGGAGGCATAATAACCGA 299
Query 300 AGGACGTGACAGAGGATACATGGAAATTAAACCAGCTCCATACAATGTTGTTCTTGAGGA 359
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGGGCGTGACAGAGGATACATTGAAATAAAACCAGCTCCATACAATGTTGTTCTTGAGGA 359
Query 360 CGATACTTTTAAAGGTGAACTAAAAGTCGGATTGAGATTCATTGCAACGGATAAATTGCA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CGATACTTTTAAAGGTGAACTAAAAGTCGGATTGAGATTCATTGCAACAGATAAATTGCA 419
Query 420 GAGGAAAGCATGGGAACTGAAGATGGAGGCCAAAAACCGCGAAGAACCAATGGTTTCTCC 479
||||||||||||||| ||||||||||||||||||||| | ||||||| |||| |||||||
Sbjct 420 GAGGAAAGCATGGGAGCTGAAGATGGAGGCCAAAAACAGTGAAGAACTAATGATTTCTCC 479
Query 480 AATTCTGAATCTAATGAAACTTCCTTTGCTAAGGTTCATAGCTGCATGGGCAAGAAGGCA 539
||||| |||||| |||||||| || || |||||||| |||||||||||||||||||||||
Sbjct 480 AATTCAGAATCTGATGAAACTCCCATTACTAAGGTTTATAGCTGCATGGGCAAGAAGGCA 539
Query 540 GTGTCTCATCAATGCAAAACTACTTTATTGTTTCGTCGACTATAAGCAATGTTCTTACTT 599
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 540 ATGTCTCATCAATGCAAAACTACTTTATTGTTTCGTCGACTATAAGAAATGC-CTTACTC 598
Query 600 CTTTATTTGTAG 611
||| ||| ||||
Sbjct 599 CTT-ATTCGTAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5