BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327738
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00340.1 | Symbols: RLK4 | receptor-like protein kinase 4 | ... 1879 0.0
> AT4G00340.1 | Symbols: RLK4 | receptor-like protein kinase 4
| chr4:148814-151686 FORWARD LENGTH=2791
Length=2791
Score = 1879 bits (1017), Expect = 0.0
Identities = 1147/1211 (95%), Gaps = 4/1211 (0%)
Strand=Plus/Plus
Query 1228 GGAAACATCTCTAAATCCATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1287
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GGAAACATCTCTAAGTCTATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1452
Query 1288 GGGATTACATTGTTGGTGCCATTGATTCTGTTGAAGAGGAGTCGGAAGAGGAAGAAGACG 1347
||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1453 GGGTTTACATTGTTAGTGCCATTGATTCTGTTGAAGAGGAGTCGAAAGAGGAAGAAGACT 1512
Query 1348 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAAT-TTGAAGGTCTTTTCTTTCAAGGA 1406
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1513 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAATCTT-AAGGTATTTTCTTTCAAGGA 1571
Query 1407 GCTTCAAGCAGCTACCAATGGGTTTTCGGATAAGGTTGGACACGGTGGTTTTGGGGCAGT 1466
||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct 1572 GCTTCAATCAGCTACCAATGGGTTCTCGGATAAGGTCGGACACGGCGGTTTTGGGGCGGT 1631
Query 1467 -TTTCAAAGGAACATTACCGGGTTCTTCTACCTTTGTGGCCGTGAAACGCTTAGAAAGAC 1525
||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1632 GTTT-AAGGGAACATTACCGGGTTCTTCTACATTCGTGGCTGTGAAACGCTTAGAAAGAC 1690
Query 1526 CTGGAAGCGGGGAGAGCGAGTTCCGGGCTGAGGTATGTACCATTGGCAACATTCAACATG 1585
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1691 CTGGAAGCGGGGAGAGTGAGTTCCGGGCAGAGGTATGCACCATTGGGAACATTCAACATG 1750
Query 1586 TCAATCTCGTTAGGCTTCGGGGTTTCTGTTCAGAGAATCTTCACAGACTTCTTGTCTACG 1645
||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| |
Sbjct 1751 TCAATCTCGTTAGGCTTAGAGGTTTCTGTTCAGAGAATCTTCATAGGCTTCTTGTCTATG 1810
Query 1646 ATTACATGCCACAAGGATCCCTGAGCACCTATTTGTCTAGAACAAGCCCCAAATTGCTAA 1705
|||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1811 ATTACATGCCACAAGGATCCTTGAGTTCCTATCTGTCTAGAACAAGCCCCAAATTGCTAA 1870
Query 1706 ACTGGGAGACCCGTTTTAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1765
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GCTGGGAGACCCGTTTCAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1930
Query 1766 AAGGATGCAGGGACTGTATTATTCACTGTGATATCAAGCCGGAGAACATTCTTTTGGACA 1825
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1931 AAGGATGCAGGGACTGTATTATACACTGTGATATCAAACCGGAGAACATTCTTTTGGACA 1990
Query 1826 GCGATTACAACGCCAAAGTATCTGATTTTGGCTTGGCTAAGCTCCTTGGCCGTGACTTCA 1885
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1991 GTGATTACAACGCCAAAGTGTCTGATTTTGGCTTGGCTAAGCTCCTTGGACGTGACTTCA 2050
Query 1886 GCAGAGTTCTAGCCACAATGAGAGGGACATGGGGCTACGTGGCTCCTGAATGGATATCAG 1945
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2051 GCAGAGTTCTAGCCACGATGAGAGGGACATGGGGCTACGTGGCTCCCGAATGGATATCTG 2110
Query 1946 GTTTGCCCATCACAACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2005
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 GTTTGCCCATCACGACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2170
Query 2006 TCGGTGGTCGAAGAAATGTCATTGTTAATAGCGATACACTTGGAGAGAAAGATACAGAAC 2065
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2171 TCGGTGGTAGAAGAAATGTCATTGTTAATAGCGATACACTGGGAGAGAAAGAGACAGAAC 2230
Query 2066 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAAATCATACAAGGAAATGTGGACT 2125
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2231 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAGATCATACAAGGCAATGTGGACT 2290
Query 2126 CTGTGGTCGACTCTAGACTCAACCGAGAATATAACATTGAAGAGGTGACGAGGATGGCAA 2185
||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2291 CTGTGGTTGACTCTAGACTCAACGGAGAATATAACACTGAAGAGGTGACGAGGATGGCAA 2350
Query 2186 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCGATGGGAACGGTAG 2245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2351 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCAATGGGAACGGTAG 2410
Query 2246 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACAGTTCCTCCACCGCCTAAATTGATACAAG 2305
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2411 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACGGTTCCTCCACCGCCTAAATTAATACAAG 2470
Query 2306 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGTGGCACAACCTGTAGCGAAAGTCGTG 2365
|||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||
Sbjct 2471 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGCGGCACAAGCTGTAGTGAAGGCCATG 2530
Query 2366 GCTGTTCGGATCTCAACACTGGATTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2425
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 2531 GCTGTTCGGATCTCAATACAGGTTTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2590
Query 2426 CTTCTCCTTGA 2436
|||||||||||
Sbjct 2591 CTTCTCCTTGA 2601
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1202 (94%), Gaps = 14/1202 (1%)
Strand=Plus/Plus
Query 22 cttcatcttcttcttcttcttctcctcttccttcttcctccactatcttcttctGTGGAA 81
||| |||||| ||||||||||||||||||||||| | ||||| | | | ||||| |
Sbjct 158 CTT-ATCTTCCTCTTCTTCTTCTCCTCTTCCTTC-T--TCCACCA-C--CATCTGT--AC 208
Query 82 AACAACAAAGTTATCATCAAAGGAAACCATACGATTCTCAGCTTCAAAGCTATTTTCCGG 141
|| | |||||||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct 209 AA-AGCAAAGTTATCATCAAAGGAAACCAAACCATTCTGAGTTTCAAAGCTATTTTCCGG 267
Query 142 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTATTTGGGTATCTCTTATGCT 201
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 268 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTACTTGGGTATCTCTTACGCT 327
Query 202 TCCATGCCTACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCCGATCCT 261
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 328 TCTATGCCAACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCGGATCCT 387
Query 262 GACTCTTCCACTCTCGAGCTCACCTCCACCGGACACCTAATCGTCAG-AAACTCCCGTGA 320
||||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||
Sbjct 388 GACTCTTCCACTCTCGAGCTCACCTCCACCGGATACCTAATCGTCAGTAACCT-CCGTGA 446
Query 321 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 506
Query 381 CGGGAATCTGATTTTGATCAACGACGACGGCTCTCCGGTTTGGCAGAGCTTTGATAATCC 440
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 507 CGGGAATCTGATTTTGATCAACGACGACGGTTCTCCGGTTTGGCAGAGCTTTGACAATCC 566
Query 441 GACCGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACGGCTATGACTTCGTGGCG 500
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 567 GACTGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACAGCTATGACTTCGTGGCG 626
Query 501 GACTCTGTTCGATCCTTCGCCGGGATTTTACTCCCTGAGACTGAGTCCAGGCTTCAACGA 560
|| ||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 627 GAGTCTCTTCGATCCTTCGCCGGGGTTTTACTCTCTGAGACTGAGTCCAAGCTTCAACGA 686
Query 561 GTTCCAGCTTGTTTACAAAGGAGCCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 620
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 687 GTTCCAGCTTGTTTACAAAGGAACCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 746
Query 621 TGCCTTCGTCGGCGTTCCAGAGATGACCATTCCATACATCTACAGGTTCCATTTCGTTAA 680
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 747 AGCCTTCGTCGGCGTTCCGGAAATGACCATTCCTTACATCTACAGGTTCCATTTCGTTAA 806
Query 681 CCCTTACACTCCCTCGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACGCCATTTCCGA 740
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 807 CCCTTACACTCCCACGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACTCCGTTTCCGA 866
Query 741 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 926
Query 801 CCCACAGACGCAGAGCTGGAACATGTTCTGGTTTCAGCCGGAGGGTCCGTGCCGCGTTTA 860
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 927 TCCACAGACGCAGAGCTGGAACATGTTCTGGTTGCAGCCGGAGGATCCTTGCCGCGTTTA 986
Query 861 CAGTCTCTGTGGTCAATTAGGGTTTTGCAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 920
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 987 CAATCTCTGTGGTCAATTAGGGTTTTGTAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 1046
Query 921 CCGCGGTTTCCGACCTAAGAACGACGACGCGTGGAGATCTGATGATTACAGCGACGGATG 980
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1047 CCGCGGTTTCCGGCCTAGGAACGACGCCGCGTGGAGATCTGATGATTACAGCGACGGATG 1106
Query 981 CCGCCGTGAAAATGGTGATTCCGGCGAAAAGAGTGATACTTTTGAGGCGGTTGGTGATCT 1040
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1107 CCGCCGTGAAAACGGTGATTCCGGCGAAAAGAGTGATACTTTTGAAGCCGTTGGTGATCT 1166
Query 1041 GCGGTACGACGGTGATGTGAAGATGTCGCGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1100
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1167 ACGCTACGATGGTGATGTGAAGATGTCACGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1226
Query 1101 AACCTGCTTGGGAAACTCTTCTTGTGTTGGTTTTTATCATAACGAGAACTCGAATCTCTG 1160
||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1227 AACTTGCTTAGGAAACTCTTCTTGTGTTGGTTTTTATCATAAGGAGAAGTCTAATCTCTG 1286
Query 1161 CAAAATTCTACTCGAGTCGCCGA-TAAACCTGAAGAATTCGAGCTCCTGGACTGGAATTA 1219
||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||||| |||
Sbjct 1287 CAAAATTTTACTCGAGTCGCCGAATAATC-TGAAGAATTCGAGCTCGTGGACTGGAGTTA 1345
Query 1220 GT 1221
||
Sbjct 1346 GT 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120983313450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5