BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327739

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A | chr4:145904...   915    0.0  


> AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A | chr4:145904-148339 
FORWARD LENGTH=1177
Length=1177

 Score =  915 bits (495),  Expect = 0.0
 Identities = 549/575 (95%), Gaps = 4/575 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAGGTTGCTGTAGTTCTTCGAGGAAGTCACATCTTGTTGGAACACCTGTTTACTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  ATGGGAGGTTGCTGTAGTTCTTCGAGGAAGTCACATCTTGTTGGAACACCTGTTTACTAT  287

Query  61   TATTGTCCAGAATCTTTTGAAGAGCTCGGGCCTTCAGGAGCTCGAGCTGGTGTGGGATCA  120
            |||||||||||||||||||||||||| |  ||||||||| | || |||||||||||||||
Sbjct  288  TATTGTCCAGAATCTTTTGAAGAGCTTGTCCCTTCAGGAACCCGTGCTGGTGTGGGATCA  347

Query  121  GCATTCACCACAGGCCTCTTGGTTGATATAGGTTTGGATTTC-TCCATACCTGACACCTT  179
            ||||||||||||||||||||||||||||||||||||||   | || ||||||||||||||
Sbjct  348  GCATTCACCACAGGCCTCTTGGTTGATATAGGTTTGGAGA-CATCTATACCTGACACCTT  406

Query  180  TTGTGCTCCTGCTCCTCTTCCATATGATTTGCTTTTGGGACGACCACAATGCACAGATTC  239
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  407  TTGTGCTCCTGCTCCTCTTCCATATGATTTGCTTTTGGGGCGACCACAATGCACAGATTC  466

Query  240  TGAGTCCATCAAAGGAAGGATGAGTGGAAGCAGTTTTGAAACGCTAGCGACATGTGAAGA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  467  TGAGTCCATCAAAGGAAGGATGAGTGGAAGCAGTTTTGAAACGCTAGCGACGTGTGAAGA  526

Query  300  TCTTGGGGAA-CTAGACTGTAAAACTCAAGCCAGCTCAGTCATTCTTTCACCGAGGAAAT  358
            |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  527  TCTTGGGGAATC-AGACTGTAAAACTCTAGCCAGCTCAGTCATTCTTTCACCGAGGAAAT  585

Query  359  CCGATTTCTCTAAACAGAAAGGATTGAAGATATTGGTAGATGAAGAGGAGGACTGTTGTC  418
            | |||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||
Sbjct  586  CAGATTTCTCGAAACATCAAGGATTGAAGATATTGGTTGATGAAGAGGAGGACTGTTGTC  645

Query  419  CTATTTGCTTTGAAGATTATGATGTTGAGAATCCAAGACTAACGACAAACTGTGAGCACG  478
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  646  CTATTTGCTTTGAAGATTATGATGTTGAGAATCCAAGACTAACGACAAAGTGTGAGCACG  705

Query  479  ATTTTCACCTCTCTTGTCTTCTGGAGTGGATTGAAAGAAGCGATAGATGCCCAATTTGTG  538
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  706  AATTTCACCTCTCTTGTCTTCTGGAGTGGATTGAAAGAAGCGATAGATGCCCAATATGTG  765

Query  539  ATAAGGAAGTTGTGTTTGATGATTGTTTGAACTAG  573
            ||||||||||||||||||||||| | |||||||||
Sbjct  766  ATAAGGAAGTTGTGTTTGATGATCGCTTGAACTAG  800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5