BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327750
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00210.1 | Symbols: LBD31 | LOB domain-containing protein 31... 887 0.0
> AT4G00210.1 | Symbols: LBD31 | LOB domain-containing protein
31 | chr4:85693-86895 REVERSE LENGTH=670
Length=670
Score = 887 bits (480), Expect = 0.0
Identities = 601/656 (92%), Gaps = 22/656 (3%)
Strand=Plus/Plus
Query 1 ATGAGCGGAAGCACCACCGGCAGTGGAGGTCCGTGCGGCGCATGTAAGTTTCTCCGGCGG 60
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 8 ATGAGCGGAAGCACCACCGGTTGTGGAGGTCCATGCGGCGCATGTAAGTTTCTCCGACGG 67
Query 61 AAATGCGTGGCTGAATGTGTCTTCGCTCCCTACTTCGATTCGGAGGAAGGGACGTCTCAT 120
|||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 68 AAATGCGTTGCTGACTGTGTCTTCGCTCCCTACTTTGATTCGGTGGAAGGGACGTCTCAT 127
Query 121 TTCACGGCGGTGCACAAGGTTTTCGGGGCGAGCAACGCCTCCAAGCTCCTCATGATGATT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TTCACGGCCGTGCACAAGGTTTTCGGGGCGAGCAACGCCTCCAAGCTCCTCATGATGATT 187
Query 181 CCGGCCAGCCGGAGACTGGACGCCGTCGTCACGCTTACTTACGAGGCATTGGCTAGGCTT 240
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 188 CCAGCCAGCCGGAGACTGGACGCTGTCGTCACGCTTACTTACGAGGCATTGGCTAGGCTT 247
Query 241 CGCGATCCCGTCTACGGATGCGTTGGTCATATCTTCGCCCTTC-A-A-C---------A- 287
||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 248 CGCGATCCCGTCTACGGATGCGTTGGTCATATCTTCGCCCTTCAACATCAGGTGATGAAT 307
Query 288 -T-CAGGCGGAGTTAGCTTACGTCCAAACTCAACTTTCAACCTTACAAGGCCTTCCTCCG 345
| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 308 CTACAGGCGGAGTTAGCTTACGTCCAAACTCAACTCTCAACATTACAAGGTCTTCCTCCG 367
Query 346 CCGAATCCTCAAAACAATTCACGGACAGAAGCAGCCTCTTCGTCTAATGCGCCACCCATT 405
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 368 CCGAATTCTCAAAACAATTCACGGACAGAAGCAGCCTCTTCATCTAATGTGCCACTCATT 427
Query 406 TCTTCCGTCGATAATAAA-AGCAATGTGTCTTCCGCGTCGTTACACATTCCTTGTATGTC 464
||||| ||||||| ||| | |||| |||||||| |||||| ||||||||||||||||||
Sbjct 428 TCTTCTGTCGATAGCAAAGA-CAATATGTCTTCCTCGTCGTCACACATTCCTTGTATGTC 486
Query 465 ACAACAACAAGAA---GAACAGGCAAAAGAAGCTATTGAGGTCTCAACAGAGTCAGTGGA 521
||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 487 ACAACAACAAGAACAAGAACAGCCAAAAGAAGCTATTGAGGTCCCAACAGAGTCAGTGGA 546
Query 522 TCTTAGCACATTGTTTGGCCTAGAAGATCCAGTGGATGAGGACGGTGATCTGAACGCTCT 581
|||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 547 TCTTAGCACATTCTTTGGCCTGGAAAATCCAGTGGATGAGGACGGTGATCTTAACGCTCT 606
Query 582 TGCCCGTGAGTTCTT-ATCTAAGTATTTGACCGGTGGCAAATGCCGTCCATCTTCT 636
||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||
Sbjct 607 TGCCCGTGAGTTCTTCA-CTAAGTATTTGACCGGAGGCAAATACCGACCATCTTCT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5