BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327754
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00170.1 | Symbols: | Plant VAMP (vesicle-associated membra... 789 0.0
AT4G00165.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 571 4e-162
> AT4G00170.1 | Symbols: | Plant VAMP (vesicle-associated membrane
protein) family protein | chr4:70477-72211 REVERSE LENGTH=1101
Length=1101
Score = 789 bits (427), Expect = 0.0
Identities = 483/511 (95%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 239 CAGTGACTATGCAAGCCCAGAAAGAGGCTCCTCTTGATATGCAATGCAAAGACAAGTTCC 298
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 332 CAGTGACGATGCAAGCCCAGAAAGAGGCACCACTTGATATGCAATGCAAAGACAAGTTCC 391
Query 299 TTGTTCAGACTGTTGTTGTCTCTGATGGTACTACTTCCAAAGAAGTGCTCGCTGAAATGT 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 392 TTGTTCAGACTGTTGTTGTCTCTGATGGTACTACTTCCAAAGAAGTCCTCGCTGAAATGT 451
Query 359 TCAACAAGGAGGCTGGTAGAGTGATTGAGGATTTCAAATTGCGGGTTGTTTACATCCCTG 418
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 452 TCAACAAGGAGGCTGGTAGAGTGATTGAGGATTTCAAACTGCGAGTTGTTTACATTCCTG 511
Query 419 CTAATCCCCCTTCACCCGTCCCTGAAGGATCTGAAGAAGGCAACTCTCCTATGGCTTCCC 478
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 512 CTAATCCTCCTTCACCTGTCCCTGAAGGTTCTGAAGAAGGCAACTCTCCTATGGCTTCCC 571
Query 479 TCAACGAGACTGGCTCTCAAACTGCCTCACTATTTGATGACGTGTCCAGAACGTTTGAAG 538
||||||| | || ||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 572 TCAACGATATTGCCTCTCAATCTGCCTCACTCTTTGATGACGTGTCAAGAACGTTTGAAG 631
Query 539 AAACAAATGAGAAATCTTCAGAGGCGTGGTCTATGATTTCCAAATTGACGGAGGAGAAGA 598
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 632 AAACAAGTGAGAAATCTTCAGAGGCATGGTCTATGATTTCCAAATTGACGGAGGAGAAGA 691
Query 599 CTTTTGCTACTCAACAAAGTCAGAAGCTCCGACTGGAACTGGAAATGCTGAGGAAAGAAT 658
||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 692 CTTCTGCTACTCAACAAAGTCAGAAGCTCCGTCTCGAACTGGAAATGCTGAGGAAAGAAA 751
Query 659 CAAGCAAGAAGCAGTCAGGTGGTCATTCCTTGGTGTTGATGCTGCTCGTGGGTCTGCTCG 718
|||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 752 CAAGCAAGAAGCAGTCGGGTGGTCATTCCTTGCTCTTGATGCTGCTGGTGGGTCTGCTCG 811
Query 719 GTTGTGTGATTGGCTACATATTGAACCGGAT 749
|||| |||||||||||| |||||||||||||
Sbjct 812 GTTGCGTGATTGGCTACTTATTGAACCGGAT 842
Score = 335 bits (181), Expect = 6e-91
Identities = 199/208 (96%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 1 ATGACGACCGGAGATCTCGTGAATATCCATCCTACTGAGCTTAAATTCCCTTTTGAGTTG 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 127 ATGACGACCGGAGATCTCGTTAATATCCATCCTACTGAGCTTAAATTCCCCTTTGAGTTG 186
Query 61 AAGAAGCAGAGTTCGTGTTCGATGCAATTGACCAACAAGACAACTACTCAATGTGTCGCT 120
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AAGAAACAAAGTTCGTGTTCGATGCAATTGACCAACAAGACAACTACTCAATGTGTCGCT 246
Query 121 TTTAAGGTTAAAACTACCAATCCTCGCAAATACTGTGTCCGTCCTAACACCGGTGTTGTC 180
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 247 TTTAAGGTTAAAACAACCAATCCTCGCAAATACTGTGTTCGTCCTAACACTGGTGTTGTC 306
Query 181 TTGCCTGGCGATTCCTGCAATGTTACAG 208
||||| || |||||||||||||||||||
Sbjct 307 TTGCCCGGTGATTCCTGCAATGTTACAG 334
> AT4G00165.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:69273-69875
REVERSE LENGTH=603
Length=603
Score = 571 bits (309), Expect = 4e-162
Identities = 375/404 (93%), Gaps = 15/404 (4%)
Strand=Plus/Plus
Query 753 TAGTTTCAAAATAAACCTAATGGGTATCTCGAAAGCTTTGCGATCTCTTCTCATCTTGCT 812
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 TAGTTTCAAGATAAACCTAATGGGTATCTCGAAAGCTTTGCGATCTCTTCTCATCTTGCT 97
Query 813 GCTCCTCAACATGACATTCATCTTCGGTCACGTTATACCAGGAGCCACCGTCAAGCCATG 872
|||||| ||||| |||||| ||||||| || |||| ||||||||||||||||||||||||
Sbjct 98 GCTCCTTAACATAACATTCTTCTTCGGCCATGTTACACCAGGAGCCACCGTCAAGCCATG 157
Query 873 CCCT--CCCT---------C---TC-CCACGAAATGTCCAAGAGACACTCTCAAATTTGG 917
|||| |||| | | |||||||||||||||||||||| |||||||||||
Sbjct 158 CCCTCCCCCTCCCGCAAAACAAGCCACCACGAAATGTCCAAGAGACACACTCAAATTTGG 217
Query 918 AGTGTGTGGGAGCTGGTTAGGTCTGGTTCGTGAGGTCATCGGTACACCACCGAGCCAGGA 977
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 218 AGTGTGTGGGAGCTGGTTAGGTCTGGTTAGTGAGGTCATCGGTACACCACCGAGCCAGGA 277
Query 978 GTGTTGCTCACTCATCAAAGGTTTGGCTGACTTTGAAGCTGCCGTTTGTCTGTGCACCGC 1037
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 278 GTGTTGCTCGCTCATCAAAGGTTTGGCTGACTTTGAAGCTGCCGTTTGTCTGTGCACTGC 337
Query 1038 CCTTAAAACCAGCATTCTCGGAGTTGCTCCGGTCAAAATTCCCGTTGCTCTCACTCTGCT 1097
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 ACTTAAAACCAGCATTCTCGGAGTTGCTCCTGTCAAAATTCCCGTTGCTCTCACTCTGCT 397
Query 1098 TCTCAACTCTTGCGGCAAAAATGTTCCTCAGGGATTCGTCTGCT 1141
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TCTCAACTCTTGCGGCAAAAATGTTCCTCAGGGATTCGTCTGCT 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5