BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327776

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38140.1 | Symbols:  | RING/U-box superfamily protein | chr4...   667    0.0  


> AT4G38140.1 | Symbols:  | RING/U-box superfamily protein | chr4:17899868-17900305 
REVERSE LENGTH=438
Length=438

 Score =  667 bits (361),  Expect = 0.0
 Identities = 406/428 (95%), Gaps = 2/428 (0%)
 Strand=Plus/Plus

Query  1    ATGATTTCAATGTTGTTTCCGCGGTCGCCTTTGTGCACAGCAGCCATAGTATTCTACACA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATTTCAATGTTGTTTCCGCGGTCGCCTTTGTGCACAGCAGCCATAGTATTCTACACA  60

Query  61   TGTGTGTGCATTCCCTTAGGGAGGTTGAAGAAGAATGGTGGAGATGCAGAAGCGCATGAT  120
            ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct  61   TGTGTGTGCATTCCCTTGGGGAGGTTGAAGAAGAATGGTGGAGATGCGGATGCGCATGAT  120

Query  121  GATGACGGTTACCATCTAGTGGGAGTGATGTTTGGGGACAAGGAAAAGGAGGAGGAAATT  180
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GATGACGGTTACAACCTAGTGGGAGTGATGTTTGGGGACAAGGAAAAGGAGGAGGAAATT  180

Query  181  TGCTGCCCCATATGCCTGGCGGAGTTTGAGGCTGAGGATGCGGTGACCCGTCTTCCCAGA  240
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  181  TGCTGCCCCATATGCCTGGTGGAGTTTGAGGCTGAGGATGCGGTGACCCATCTTCCCAGA  240

Query  241  TGCGCTCATCTCTTCCACATCAATTGCATAGAACCTTGGCTTCTCCGTGGCCATCTCACG  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  241  TGCGCTCATCTCTTCCATATCAATTGCATAGAACCTTGGCTTCTCCGTGGCCACCTCACT  300

Query  301  TGCCCTCTCTGCAGATCATTTGTATTGGCTCCAACTCCTTATACGCGCAATGTCAATAAT  360
            |||||||||||||||||||||||||||||||||||||||  ||| |  ||||||||||||
Sbjct  301  TGCCCTCTCTGCAGATCATTTGTATTGGCTCCAACTCCTCCTACACAAAATGTCAATAAT  360

Query  361  GTC-CACTCCTCTTCCACCTTGTATCTCCCTATCTTCttttttttCTGCCTCTTTCTCCA  419
            | | |||||||||||||||||||||||| |||||||||| ||||||||  ||||||||||
Sbjct  361  G-CACACTCCTCTTCCACCTTGTATCTCTCTATCTTCTTCTTTTTCTGTATCTTTCTCCA  419

Query  420  TCTTCTTG  427
            ||| ||||
Sbjct  420  TCTACTTG  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5