BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327784
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38220.2 | Symbols: | Peptidase M20/M25/M40 family protein ... 1908 0.0
AT4G38225.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1495 0.0
> AT4G38220.2 | Symbols: | Peptidase M20/M25/M40 family protein
| chr4:17925180-17927097 FORWARD LENGTH=1551
Length=1551
Score = 1908 bits (1033), Expect = 0.0
Identities = 1170/1234 (95%), Gaps = 18/1234 (1%)
Strand=Plus/Plus
Query 11 gtcttcttcttcttctcgtcgttgttcttcAGCTATGCCTCCTTTCTGCGGTGGCCGGCG 70
||||||||| ||||||| |||||||| || | | | | | |||||||||||||||||||
Sbjct 76 GTCTTCTTCGTCTTCTCCTCGTTGTTGTT--GTTCTTCAT-CTTTCTGCGGTGGCCGGCG 132
Query 71 ACGACGCAATCATCTCCAGATTCCAGGAGTATCTCCGAATCAACACGGTCCAGCCCAACC 130
||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 133 ACGACGCCATCGTCTCCAGATTCCAGGAGTACCTCCGAATCAACACGGTTCAGCCCAACC 192
Query 131 CGGATTACTACAAAGCCGTTGACTTTATAA-ACTCTCAGGCAAAACCACTCTCCCTCGAA 189
|||| ||||||||||||||||||||||||| | |||||||| |||||||| |||||||||
Sbjct 193 CGGAATACTACAAAGCCGTTGACTTTATAATA-TCTCAGGCGAAACCACTGTCCCTCGAA 251
Query 190 TCTCAGACGATCGAGCTCGTCAAGGGAAAGCCCCTTCTCCTCCTCAAATGGGTTGGCTCC 249
|||||||||||||| | || || |||||||| |||||||||||||||||||||||||||
Sbjct 252 TCTCAGACGATCGAATTTGTAAAAGGAAAGCCGCTTCTCCTCCTCAAATGGGTTGGCTCC 311
Query 250 GACCCAACCCTACCTGCCTTTCTCCTCAACTCCCACACCGATGTCGTTCCGTTTGAGGAC 309
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 312 GACCCAACCCTACCTGCCTTTCTCCTCAACTCCCACACCGATGTCGTTCCCTTCGAGGAC 371
Query 310 TCCAAGTGGACTCACCATCCTCTCCAAGCTCACATCGACCACCACGGCCTCATCTATGCC 369
|||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 372 TCCAAGTGGACTCACCATCCGCTCCAAGCTCACATGGACCACCATGGCGACATCTATGCC 431
Query 370 AGGGGTTCCCAGGACATGAAGTGCGTCGGGTTGCAGTACCTCGAGGCCATACGCAAGCTC 429
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 AGGGGTTCCCAGGACATGAAGTGCGTCGGGATGCAGTACCTCGAGGCCATACGCAAGCTC 491
Query 430 CAGGCTTCCGGGTTTC-AGCCTCTCCGATCCGTCTATCTCTCCTTCGTCCCCGATGAAGA 488
||||||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAGGCTT-CTGGCTTCAAGCCACTCCGATCCGTCTATCTCTCCTTCGTCCCCGATGAAGA 550
Query 489 GATCGGCGGCCACGATGGCGCCGAGAAGTTCGTC-GAATCCCAATTCTTCAAGAGCTTGA 547
||| ||||||||||||||||| |||||||| | | ||||||||||| |||||||||||||
Sbjct 551 GATTGGCGGCCACGATGGCGCAGAGAAGTTTG-CTGAATCCCAATTATTCAAGAGCTTGA 609
Query 548 ACATCGCAATCGTGCTCGACGAAGGCCTGCCATCGCCTACTGAGAGTTACAGAGTATTCT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ACATCGCAATCGTGCTCGACGAAGGCCTGCCATCGCCTACTGAGAGTTACAGAGTATTCT 669
Query 608 ACGGAGAGAGGAGTCCCTGGTGGCTGGTGATTAAGGCTAAAGGTCCACCTGGCCACGGTG 667
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ATGGAGAGAGGAGTCCCTGGTGGCTGGTGATTAAGGCTAAAGGTCCACCTGGCCACGGTG 729
Query 668 CCAAGCTCTATGATAACTCTGCCATGGAGAATCTGCTCAAAAGCATTGAGAGTATTCGCA 727
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CCAAGCTCTATGACAACTCTGCCATGGAGAATCTGCTCAAAAGCATTGAGAGTATTCGCA 789
Query 728 GATTCAGAGCTTCTCAGTTCGATCTGCTCAAAGCTGGTGGGATAGGTGAAGGCGATGTTG 787
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 790 GATTCAGAGCTTCTCAGTTCGATCTTCTCAAAGCTGGTGGGATAGCTGAAGGCGATGTTG 849
Query 788 TCTCTGTGAACATGGCCTTCCTCAAGGCTGGCACACCTTCTCCAACTGGTTTCGTAATGA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TCTCTGTGAACATGGCCTTCCTCAAGGCTGGCACACCTTCTCCAACTGGTTTCGTAATGA 909
Query 848 ATCTGCAACCATCTGAGGCAGAAGCTGGTTTCGACATTCGTGTTCCACCCAACGTTGATG 907
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 910 ATCTGCAACCATCTGAGGCAGAAGCTGGTTTCGACATTCGTGTTCCACCCAGCGTTGATG 969
Query 908 CTGAAGCACTCGAAAGACGTTTGGTGGAGGAATGGGCTCCAGCAGCACGAAACATGTCCT 967
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 970 CTGAAGCACTCGAAAGACGTTTAGTGGAGGAATGGGCTCCAGCAGCACGAAACATGTCCT 1029
Query 968 TTGAG-T-------T-CAAGCAGAAGCTTACGGGGAAGCAATTCCTTACAGCAGCAGATG 1018
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TTGAGCTGGGGCAGTTCAAGCAGAAGCTTACGGGGAAGCAATTCCTTACAGCAGCAGATG 1089
Query 1019 ATTCAAATCCTTGGTGGGGGCTCTTGGAAAATGCTGTTAAGGAAGCCGGAGGTAGGACCG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ATTCAAATCCTTGGTGGGGGCTCTTGGAAAATGCTGTTAAGGAAGCCGGAGGTAGGACCA 1149
Query 1079 GTAAGCCTGAGATTTTCCCTGCATCAACTGATGCTCGCTACTTCCGCAAGGCTGGCGTGC 1138
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1150 GTAAGCCTGAGATTTTCCCTGCATCAACGGATGCTCGCTACTTTCGCAAGGCTGGCGTGC 1209
Query 1139 CTGCCTTTGGGTTCTCTCCCATATCAAACACCCCGAGTTTGCTTCATGACCACAATGAGT 1198
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1210 CTGCCTTTGGGTTCTCTCCCATATCAAACACCCCGAGTCTGCTTCATGACCACAATGAGT 1269
Query 1199 ATTTGGGTAAAGCTGAGTACTTGAAGGGCATTGA 1232
||||||||||||||||||||||||| ||||||||
Sbjct 1270 ATTTGGGTAAAGCTGAGTACTTGAAAGGCATTGA 1303
> AT4G38225.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17927198-17928901
FORWARD LENGTH=1249
Length=1249
Score = 1495 bits (809), Expect = 0.0
Identities = 927/979 (95%), Gaps = 27/979 (3%)
Strand=Plus/Plus
Query 1236 AACCACAATATCCCCTCTTTCTTGTTCAGCTGAAATTTCCTCGGAGATTGCCCTGGCGCA 1295
||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 164 AACCACAATTTCTCCTCTTTCGTGTTCAGCTGAAAGTTCCTCGGAGATTGCCCTGGCGCA 223
Query 1296 GAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTCGCTCATAATGTGTCTGGCGA 1355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 224 GAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTCGCTCAAAATGTGTCTGGCGA 283
Query 1356 ATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAACCGCTTGAACTACCTGAATC 1415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 284 ATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAACCGCTAGAACTACCTGAATC 343
Query 1416 AGTGGTTCCAGAAGCCTTTAGAGAATGGGAAGTGAAGGTGTTCGATTGGCAGACGCAGTG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGTGGTTCCAGAAGCCTTTAGAGAATGGGAAGTGAAGGTGTTCGATTGGCAGACGCAGTG 403
Query 1476 TCCCACTCTTGCCCAGCCCCACTCACTCTCCTTTCTTTACAAGTCCATCAAACTCCTCCC 1535
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 404 TCCCACTCTTGCCCAGCCCAACTCACTATCCTTTCTTTACAAGTCCATCAAACTCCTCCC 463
Query 1536 CACCGTTGGATGTGAAGCTGATGCAGCCACCCGTTACAGCATCGACCATAGGATCATCGG 1595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 464 CACCGTTGGATGTGAAGCTGATGCAGCCACCCGTTACAGCATCGACCAGAGGATCATCGG 523
Query 1596 GGGAAGCAAATCCTCTGCATTAGCCTTTTCGTATTCTGTCACTGGCTCCTATGTCGCTGT 1655
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GGGAGGCAAATCCTCTGCATTAGCCTTTTCGTATTCTGTCACTGGCTCCTATGTCGCTGT 583
Query 1656 GTGGCCTTTGCGGAACAACCAGCTTGAGGTGGAGCATTGCCTGATCAATCCAAATGACAA 1715
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 584 GTGGCCTTTGCGGAACAACCAGCTTGAGGTGGAGCATTGTCTGATCAATCCAAAGGACAA 643
Query 1716 GGAGTCTCGTGTGAGGATTTTCCAGGTTGTCAGCTTAGCAGAGACCA--A-CATGTCCTT 1772
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 644 GGAGTCTCGTGTGAGGATTTTCCAGGTTGTCAGCTTAGCAGAGACCACCAACATGTCCTT 703
Query 1773 GCAGAGTGTCAAAGTTTTCTGTGAGCAGTGGTACGGTCCTTTCAGAGACGGCGATCAGCT 1832
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 704 GCAGAGTGTCAAAGTTTTCTGTGAGCAGTGGTACGGTCCGTTCAGAGATGGCGATCAGCT 763
Query 1833 CGGAGGTTGTGCCATCCGTAGCTCCGGCTTTGCTTCTACACCTACCACTGCAGCTTCAGT 1892
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 764 TGGAGGCTGTGCCATCCGTAGCTCCGGCTTTGCTGCTACACCTACCACTGCAGCTTCAGT 823
Query 1893 GGTTACCGGTTCTTGGAGAGTTCTACTTGCTACCACTAGCTTTCACGCCTCTGATTTCGT 1952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GGTTACCGGTTCTTGGAGAGTTCTACTTGCTACCACTAGCTTTCACGCCTCTGATTTCG- 882
Query 1953 GAGTTGGCCTCCTTTTTTAAGTGGTTGTATTCAACAAGTTACAGGCGAGAAGGTGATTGA 2012
| ||| | | | | ||||||||||| |||||||||||||||||
Sbjct 883 G--TTG---T--------A--T------A--CAACAAGTTACTGGCGAGAAGGTGATTGA 919
Query 2013 GATTTTGAGAGAAGAAAAGGATATTTTATTGCTTCCGCAAGAGATGTGGTGCTCACTCCA 2072
|||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 920 GATTGTGAGAGAAGAAAATGATCTTTTATTGCTTCCGCAAGAGCTGTGGTGCTCACTCCA 979
Query 2073 AGAAGGCAAAGACCGCGAAAGAGTATTTTCAGTAGGATGGGTGTTTGAGCCAGGCCATGC 2132
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 980 ACAAGGCAAAGACCGCGAAAGAGTATTTTCAGTAGGATGGGTCTTTGAGCCAGGCCATGC 1039
Query 2133 TATCACATCCAGCTGCGTCTTCTCTAGCGATTCTAAGCTAAAGGAGGTAACAGTGGGGAG 2192
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1040 TATCACATCCAGCTGCGTCTTCTCTAGCGATTCTAAGCTAAAGGAGGTAACAATGGGGAG 1099
Query 2193 AGAGACTGCTCTATCAGAT 2211
|||||||||||||||||||
Sbjct 1100 AGAGACTGCTCTATCAGAT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5