BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327803
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38470.1 | Symbols: | ACT-like protein tyrosine kinase fami... 2662 0.0
> AT4G38470.1 | Symbols: | ACT-like protein tyrosine kinase family
protein | chr4:17999432-18003681 FORWARD LENGTH=1858
Length=1858
Score = 2662 bits (1441), Expect = 0.0
Identities = 1627/1714 (95%), Gaps = 23/1714 (1%)
Strand=Plus/Plus
Query 7 AACGAGAGTTGCGCTAGTAGACTTATTTTCGACGCC-T-CCCA-GTCCAAGGCCACGATG 63
||||||||||||||||||||| |||||||||||||| | || | ||| ||||||| |||
Sbjct 16 AACGAGAGTTGCGCTAGTAGAGTTATTTTCGACGCCTTACCTACCTCCCAGGCCACTATG 75
Query 64 GACCGCCGCGAGCGCATCAAAATGGAGGTCTTCGACGAGGTTCTCCGCCGTCTCCGGCAA 123
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 76 GACCGCCGTGAGCGCATCAAAATGGAGGTCTTCGATGAGGTTCTCCGCCGTCTCCGTCAA 135
Query 124 TCCGACATCCAAGACGCCCATCTCCCTGGTTTCGAAGACGACCTCTGGACTCACTTCAAT 183
|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 136 TCGGACATTGAAGACGCCCATCTCCCTGGTTTCGAAGACGACCTCTGGAATCACTTCAAT 195
Query 184 CGCCTCCCTGCCAGGTATGCGTTGGATGTGAATGTCGAGAGGGCCGAAGACGTCTTGATG 243
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 196 CGCCTCCCTGCCAGGTATGCTTTGGATGTGAATGTGGAGAGGGCTGAAGACGTCTTGATG 255
Query 244 CACAAGCGATTGCTGCATTCTGCTTACGATCCCCAAG-CTCGGCCTGCCATCGATGTTCA 302
|||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||
Sbjct 256 CACAAGCGATTGCTGCATTCTGCTTACGATCCCC-AGAATCGGCCTGCTATCGAAGTTCA 314
Query 303 TCTCGTCCAGGTTCAACCTGCC--GA------CT--C-T---C-CTA---CTAATGATGC 344
|||||||||||||||||||||| || || | | | ||| ||||||||||
Sbjct 315 TCTCGTCCAGGTTCAACCTGCCGGGATCTCTGCTGACTTGGACTCTACTTCTAATGATGC 374
Query 345 TGCTCTTTCTTCTCCTACCCGCAAAAGCATTCACCCGTCGCCTGCCTTTGGTTCATCCCC 404
|| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 375 TGGTCATTCTTCTCCTACCCGAAAAAGCATTCATCCGCCGCCTGCCTTTGGTTCATCCCC 434
Query 405 TAATCTTGAAGCACTTGCTCTTGCAGCTTCTATCTCCCAAGACCACGATGGAGACAACTC 464
|||||||||||||||||| ||||||||| | | ||||||||| | |||| |||||||||
Sbjct 435 TAATCTTGAAGCACTTGCACTTGCAGCTAGTTTATCCCAAGACGAGGATGCAGACAACTC 494
Query 465 CGTTCATAACAATTCACTCTATTCACGGCCCTTGCATGAGATCACTTTTTCCACACAAGA 524
||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 495 TGTTCATAACAATTCACTCTATTCACGGCCCTTGCATGAGATAACCTTTTCCACAGAAGA 554
Query 525 CAAGCCTAAACTCCTTTTTCAGTTAACTGCCTTGCTTGCTGAGCTTGGGCTGAACATTCA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CAAGCCTAAACTCCTTTTTCAGTTAACTGCCTTGCTTGCTGAGCTTGGGCTGAACATTCA 614
Query 585 AGAGGCGCATGCTTTCTCTACAACTGATGGCTACTCACTAGATGTTTTTGTTGTTGATGG 644
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGAGGCACATGCTTTCTCTACAACTGATGGCTACTCACTAGATGTTTTTGTTGTTGATGG 674
Query 645 CTGGCCGTACGAGGAAACAGACAGGCTTAGAATATCATTGGAGAAAGAAGCAGCAAAGCT 704
||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
Sbjct 675 CTGGCCGTACGAGGAAACAGAGAGACTTAGGATATCATTGGAGAAAGAAGCAGCAAAGAT 734
Query 705 CGAGTTGCAGAGCCAAAGCTGGCCTATGCAGCAATCCTTCTCTCCTGAAAAGGAAAATGG 764
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 735 CGAGTTGCAGAGCCAAAGCTGGCCTATGCAGCAATCCTTCTCTCCGGAAAAGGAAAATGG 794
Query 765 GCAAACAGGTGCCAGAACTCATGTTCCAATACCCAATGATGGAACTGATGTTTGGGAAAT 824
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 795 GCAAACAGGTGCCAGAACGCATGTTCCAATACCCAATGACGGAACTGATGTTTGGGAAAT 854
Query 825 CAACCTTAAACACTTAAAATTTGGGCATAAAATAGCATCTGGTTCTTATGGAGATCTGTA 884
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 CAACCTTAAACACCTAAAATTTGGGCATAAAATAGCGTCTGGTTCTTATGGAGATCTGTA 914
Query 885 TAAAGGTACATATTGTAGCCAGGAAGTTGCTATCAAAGTCCTCAAGCCAGAGCGTCTAGA 944
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 915 TAAAGGTACATACTGTAGCCAGGAAGTTGCTATCAAAGTCCTAAAGCCAGAGCGTCTAGA 974
Query 945 TTCAGAGCTAGAGAAAGAGTTTGCCCAAGAAGTGTTTATTATGAGGAAAGTTCGACACAA 1004
||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 975 CTCAGATCTAGAGAAAGAGTTTGCCCAAGAAGTCTTTATTATGAGGAAAGTTAGACACAA 1034
Query 1005 AAATGTTGTTCAGTTCATTGGTGCTTGCACCAAGCCTCCACATCTGTGTATCGTTACAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AAATGTTGTTCAGTTCATTGGTGCTTGCACCAAGCCTCCACATCTGTGTATCGTTACAGA 1094
Query 1065 ATTCATGCCCGGTGGAAGTGTATATGACTATCTACACAAGCAAAAAGGCGTCTTTAAGCT 1124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1095 ATTCATGCCCGGTGGAAGTGTATATGACTATCTACACAAGCAAAAGGGCGTCTTTAAGCT 1154
Query 1125 TCCAACATTGTTTAAAGTAGCTATAGATATTTGCAAAGGGATGAGCTACTTACACCAAAA 1184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCCAACTTTGTTTAAAGTAGCTATAGATATTTGCAAAGGGATGAGCTACTTACACCAAAA 1214
Query 1185 TAACATAATTCACAGAGATTTGAAGGCTGCCAACCTCTTAATGGACGAAAATGAGGTGGT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 TAACATAATTCACAGAGATTTGAAGGCTGCCAACCTCTTAATGGACGAAAATGAGGTGGT 1274
Query 1245 TAAGGTTGCAGACTTTGGGGTGGCCAGAGTGAAAGCACAAACTGGAGTTATGACAGCTGA 1304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1275 TAAGGTTGCAGACTTTGGGGTGGCTAGAGTGAAAGCACAAACTGGAGTTATGACAGCTGA 1334
Query 1305 AACTGGAACATATCGCTGGATGGCTCCAGAGGTAATAGAACACAAGCCATATGATCACAA 1364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1335 AACTGGAACATATCGCTGGATGGCTCCAGAGGTGATAGAACACAAGCCATATGATCACAA 1394
Query 1365 GGCTGACGTATTCAGCTACGGGATTGTGCTATGGGAGTTGTTGACTGGGAAGCTTCCATA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GGCTGACGTATTCAGCTACGGGATTGTGCTATGGGAGTTGTTGACTGGGAAGCTTCCATA 1454
Query 1425 TGAATACATGACGCCATTGCAGGCAGCAGTAGGGGTTGTCCAAAAGGGATTACGGCCTAC 1484
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1455 TGAATACATGACGCCGTTGCAGGCAGCAGTAGGGGTTGTCCAAAAGGGATTAAGGCCAAC 1514
Query 1485 AATACCAAAGAACACGCATCCAAAATTGGCAGAGCTATTGGAGAGATTGTGGGAGCAGGA 1544
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1515 AATACCAAAGAACACGCATCCGAAATTGGCAGAGCTATTGGAGAGATTGTGGGAGCATGA 1574
Query 1545 TTCGACGCAGAGACCAGACTTCTCAGAGATCATAGAGCAGCTGCAAGAGATAGCCAAGGA 1604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1575 TTCGACGCAGAGACCAGACTTCTCAGAGATCATAGAGCAGCTTCAAGAGATAGCCAAGGA 1634
Query 1605 GGTAGGAGAAGAAGGAGAGGAGAAGAAAAAATCGTCAACAGGACTAGGAGGGGGTATCTT 1664
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1635 GGTAGGAGAAGAGGGAGAGGAGAAGAAAAAGTCGTCAACAGGACTAGGAGGGGGTATATT 1694
Query 1665 TGCAGCCCTGAGGAGAAGCACCACACATCATTGA 1698
||||||||||||||||||||||||||||||||||
Sbjct 1695 TGCAGCCCTGAGGAGAAGCACCACACATCATTGA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5