BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327813
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38560.2 | Symbols: | Arabidopsis phospholipase-like protei... 2230 0.0
> AT4G38560.2 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr4:18029198-18031333 FORWARD LENGTH=1791
Length=1791
Score = 2230 bits (1207), Expect = 0.0
Identities = 1458/1578 (92%), Gaps = 21/1578 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGGAAAAGTACATCATGATTGTCCCAACTCAGCAAATCCCTACCATGAGTGCAAT 60
|||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| |
Sbjct 78 ATGTCTGGAATAGTACATCATGATTGTCCTAACTCAGGAAATCCCTACCACGAGTGCCAC 137
Query 61 GATCAGTGTTTCAAGAGAATAAGCTCTGGAGATGTCCCCAAAAAGGA-AAAGAAACGGTT 119
|||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||
Sbjct 138 GATCAGTGTTTCAAGAGAATAAGCTCCGGAGATGTCCCCAAGAAGGAGAAA-AAACGGTT 196
Query 120 TGGCTTTGGTAAACCAGCTTGTAGCAAGGAAACGCCTCCTACCAGTCCGGCTCGTGTTAT 179
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 197 TGGCTTTGGTAAACCAGCTTGTAGCAAGGAAACGCCTCTTACCAGTCCGGTTCGTGTTAT 256
Query 180 TGCGGGAAACAGATCGCCACTTCCGAGTTATTACGGAAAGAGAATGCTTGAATCAGACGA 239
||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 257 TGCGGGAAACAGATCACCACTTCCGAGTTATTACGGAAAAAGAATGGATGAGTCAGACGA 316
Query 240 GTCTCCCTCCTTCTCTTCCTCCGATGACTCTTTCAATGCAAACTTGCCCACACCACGTTC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTCCCCCTCCTTCTCTTCCTCCGATGACTCTTTCAATGCAAACTTGCCCACACCACGTTC 376
Query 300 T-CTTTTACATGGGAACGAAACTGCCTCAGGAATCAATTGGCTCCCCATGTCGCCTTCTT 358
|||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 377 CACTTT-ACATGGGAACGAAACTGCCCCGGGAATCAATTGGCTCCCCATGTCGCCTTCTT 435
Query 359 TCGCTGTGTATTGCAA-AAACGATTCTTTCGCATCAACGATTGATCACCTTGAAGGTGAA 417
|||||||||||||||| ||| |||| |||| |||||| ||| ||||||| ||||||||||
Sbjct 436 TCGCTGTGTATTGCAAGAAA-GATTGTTTCTCATCAAGGATCGATCACCGTGAAGGTGAA 494
Query 418 ACTCCAATTCATGATGAAATGTTATCTAAGACTCGGCTTAAGACGCCTCTAAGCCCTGAT 477
||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 495 GCTCCAATTCTTGATGAAATGCCATCTAAGACTCGGCTTAAGACACCTCTAAGTCCTGAT 554
Query 478 ACTAGGCCAAGGACTTCAGAACACAGGACAAGAAACCAAGGACCACGGTCAAAGACTCCA 537
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 555 ACTAGGCCAAGGAAATCAGAACACAGGACAAGAAACCAAGGACCACGCTCAAAGACTCCA 614
Query 538 GAACCTAGAGGAAGTTACCTTGAACCACCCAGGCCTAGGATCCCACAAACTCAGCCGGTA 597
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 615 GAACCTAGAGGAAGTTACCTTGAACCACCCAGGTCTAGGATCCCACAAACTCAGCCGGTA 674
Query 598 CAACACAGATCCCTTGAAAGTGCTGGCCTCAAATCACCTCAGAAAGTTGAAACTCGGCCT 657
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 675 CCACACAGATCCCTTGAAAGTGCTGGTCTCAAATCACCTCAGAAAGGTGAAACTCGGCCT 734
Query 658 CAGATCCCCCAAACTCAACCGACATCCTTCAACATCGGTGGTAACTATCATTATGCTGCT 717
|| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 735 CATATCCCCCAAACTCAGCCAACATCCTTCAACATCGGTGGTAACTATCATTACGCTGCT 794
Query 718 CAAGCATCCAAATA-CTATGGTAATAAAGCGGATTCGGTGTACACTAAAGACCA-AGACA 775
|||||||||||||| | ||| ||||||||||||||| ||||||||||||||| | |||||
Sbjct 795 CAAGCATCCAAATATC-ATGCTAATAAAGCGGATTCAGTGTACACTAAAGAC-AGAGACA 852
Query 776 AATGCATTCTACTCTATCCCGAAATTCTTTTGTCCCCTCGAA-AAAATCCGACATCGAGA 834
||||| || |||| |||||||| |||||||||||||||| || |||||| |||||| |||
Sbjct 853 AATGCGTTATACTTTATCCCGATATTCTTTTGTCCCCTC-AAGAAAATCTGACATCAAGA 911
Query 835 TCCATTACGGTACTGATGCTTCACCAAAAATC----AC-----TAGACCAACAATCAAAT 885
|||||||||||| ||||||||| ||||||||| || ||||| ||||||| ||
Sbjct 912 TCCATTACGGTATTGATGCTTCCCCAAAAATCCCGTACACCACTAGACAAACAATCGAAG 971
Query 886 GAGCCACCAGAGCTGCCTGACGAATGCCAGAGCTTTACTCTATCTGAGATCGAATGCATG 945
|||||| | ||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 972 GAGCCATTACAGCTGCCTGTCGAATGCCATAGCTTTACTCCATCTGAGATCGAATGCATG 1031
Query 946 AAAGGGTTAAAGATCTACGAAACAGGGGAGGAAATGGAGTCAATGATTCCAGAGTCGTAT 1005
|||| ||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 1032 AAAGCGTTAAAGATTTACGAAACAGGAGAGGAAATGAAGTCAATGATTTCAGAGTCGTAT 1091
Query 1006 GTCTATGTAGGAAGGTACAAGGTCAGAGCCAGCGTCTCGGCCACTCTGCAGAAAATCCTG 1065
|||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1092 GTCTCTGTAGGAAGCTACAAGGTCAGAGCGAGCGTCTCGTCCACTCTGCAGAAAATCCTG 1151
Query 1066 GACAAGCATGGTGACATAGCGTCCGGTTCCAAACTTCAGTCGCTGCCCACGAAATCTTAC 1125
||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1152 GACAAGCATGGAGACATAGCGTCCGGTTCCAAACTTCAGTCACTGCGCACAAAATCTTAC 1211
Query 1126 TCGCTTGAAACGCTAGCCGCAGTGGTTCTTGAACTCCAATCGACGCCACTGAAGGAATTG 1185
|||||||| || |||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1212 TCGCTTGAGACTCTAGCCGCGGTGGTTCTTGAACTCCAATCGACGCCCCTGAAGAAATTG 1271
Query 1186 AAGGAGACTCGGGTCTTGGAAATGCTATCTGTTGTTACAGACGCAGAGTCGGTTAAAATC 1245
||| || | || || |||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 1272 AAGCAGGCACGCGTGTTGGAAATGCTATCGGTTGTTATAGACGCAGAGTCTGTTAAAATC 1331
Query 1246 AGAGCTGGTTGGCTCAGGGAGATCCTGAACGAAATTCTTGAAGCGGCCAACCACTATGAT 1305
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1332 AGAGCTGGTTGGCTCAGGGAGATCCTGAACGAGATTCTTGAAGCGGCCCACCACTATGAT 1391
Query 1306 GGACACGAGACAACGGTGGTGGAGAAGGAAGCGCGTGAGCTGGATATGCTGTTTGAAAGA 1365
||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||
Sbjct 1392 GGACACGAGACAACGGTGGTGGAGAAGGAAGGGCGTGAACGGGATATGCTGCTTGAAAGA 1451
Query 1366 GAAGAAATGGAGAAGATACAGGAGGAGGTGAGATTGAAGGAGAAGGAGGCGAAGGACTTC 1425
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1452 GAAGAAATGAAGAAGATACAGGAGGAGGTGAGATTGAAGGAGAAGGAGGCAAAGGACTTT 1511
Query 1426 CGTAAAGGAGTCATGGAAATGGCAGGGCGTTTGGGAGAACTGGAGATGAAGCGAGCGCGT 1485
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1512 CGTAAAGGAGTCATGGAAATGGCAGGGCGTTTGGGAGAACTGAAGATGAAGCGAGCGCGT 1571
Query 1486 TTGGAGAAACGCTTAGCGTTTCTGAGCTCCAAGGTGGAAAAGTTTGAGGGGGAATCTCTG 1545
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1572 TTGGAGAAACGCTTGGCGTTTCTGAGCTCCAAGGTGGAAAAGTTTGAGGGGGAATCTTTG 1631
Query 1546 TTGGAGAACGTCTTTTGA 1563
|| |||||||||||||||
Sbjct 1632 TTAGAGAACGTCTTTTGA 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5