BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327819
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38640.1 | Symbols: | Plasma-membrane choline transporter f... 2667 0.0
> AT4G38640.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr4:18059653-18062289 REVERSE LENGTH=2100
Length=2100
Score = 2667 bits (1444), Expect = 0.0
Identities = 1598/1672 (96%), Gaps = 11/1672 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCGGACGACGGCGACCCCACTAAATTCGCTGCAATCTACGACTCATCCTCTCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ATGGCGGCGGACGACGGCGACCCCACTAAATTCGCTGCAATCTACGACTCATCCTCTCCG 258
Query 61 TCGCACCCTCTTCTCTCTAAACCCTCCACGTCCGCTCTCGATTCTCCGCGTCGAAGTGAT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TCACACCCTCTTCTCTCTAAACCCTCCACGTCCGCTCTCGATTCTCCGCGTCGAAGTGAT 318
Query 121 CCCGAATCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCCAGAACTTTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 319 CCCGAATCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCAAGAACTTTC 378
Query 181 AAGGACATCCCTTTCCTTCTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 AAGGACATCCCTTTCCTACTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 438
Query 241 ATCTTCTCCGTTTTCCATAGAAATAGCGATTACGGGAGCTCCTCTTCCTTCACCTACGAT 300
||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 439 ATCTTCTCCATTTTTCATAGAAATAACGATTACGGGAACTCCTCTTCCTTCACCTACGAT 498
Query 301 TTCCA-CTCTAGCTCCTGCGTCAAAAATTCCACCTTTACGAAAATTTCGGAT-GG-A-TA 356
|| || |||||||||||||||||||||||| ||||||||||||||||||||| || | ||
Sbjct 499 TT-CACCTCTAGCTCCTGCGTCAAAAATTCTACCTTTACGAAAATTTCGGATGGGTACTA 557
Query 357 -----CTAC-TCGAGTGTCATGTACGGTATGGTTTCTTCGTCTGATCCAGTCTTTGAGAA 410
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 558 CTGGGCTTCTTCGAGTGTCATGTACGGCATGGTTTCTTCGTCTGATCCAGTCTTTGAGAA 617
Query 411 GGATTTAATCTGGACCCTTGTTGTAACGCTCATCTTAAGCGTGCCCTTCTGTTTTAGCGT 470
|||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 618 GGATTTGATCTGGACACTTGTTGTAACGCTTATTTTAAGCGTGCCCTTCTGTTTTAGCGT 677
Query 471 CCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTTTGT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTTTGT 737
Query 531 CCTTTTCCCCATCTTTTTCAATCTCTATTGGTTTGTCGCTTGTACTCTTAGCTCTTCTTG 590
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 738 CCTTTTTCCCATCTTTTTCAATGTCTATTGGTTTGTCGCCTGTACTCTTAGCTCTTCTTG 797
Query 591 TAGTGACGCCCTCCCTCTAGCTTACAGAATTCTTGTCCTAGTCTTCGTTTTCTTGATCAT 650
||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 798 TAGCGATGCCCTCCCTCTAGCTTACAGAATACTTGTCCTAGTCTTTGTTTTCTTGATCAT 857
Query 651 CGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACAGAATTGAGCTCACTATCCAAAT 710
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 858 CGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACAGAATTGATCTTACTATCCAAAT 917
Query 711 CATCAGTGTTGCATCGGATGCCTTGTCCAAAAATTTGAAGCTTTTTGTTGTGTTGCCGCT 770
||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 918 CATCAGTGTTGCATCTGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGCTGCCGCT 977
Query 771 GCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTTGCAAA 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTTGCAAG 1037
Query 831 GTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCACTACTTTTGTGAGTGGAAGGA 890
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1038 GTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCAGTACTTTTGTGAGTGGAAAGA 1097
Query 891 AGATTCTTGGGTTCCTGCGTATTACGCTCTTGCCATTTTAACGATGCTTTGGTCTCTTGC 950
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1098 AGATTCTTGGGTTCCTGCGTATTACGCTCTTGCCATTTTAACGATGATCTGGTCTCTTGC 1157
Query 951 TGTAATGGTGGAAATGCAAGTCTATGTGATAAGTGGAGCTATTGCGCAGTGGTATTTCTC 1010
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1158 TGTAATGGTGGAAATGCAAGTGTATGTGATAAGTGGAGCTATTGCTCAGTGGTATTTCTC 1217
Query 1011 TAAGGAAGACTCAGTGCCTAAAAAATGCATCCGGAGTTCTTTGAGGAACGCATTTGGTCA 1070
|||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1218 CAAGGAAGACTCAATCCCTAAAAAATGCATCCGGAGTTCTTTGAGGAATGCATTTGGTCA 1277
Query 1071 ATCCTTTGGTACAATATGTGTATCAGGACTTCTCATCTGCATTGTTCGTGTGGTCCGGGC 1130
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1278 ATCCTTTGGTACGATATGTGTATCAGGACTTCTCATATGCATTGTTCGTGTGGTCCGGGC 1337
Query 1131 AATTGTGGACAATGCAAGAGAAGAGAACCCACAAGGGATAGTGAACTTGGTTCTCCGTTG 1190
|||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 1338 AATTGTGGACAATGCAAGAGAAGAGAACACACAAGGAATAGTGAACATGGTTCTCCGTTG 1397
Query 1191 CTGCGCAAACGCCTTACTTGGAGCCCTTGACTATCTCAACAAGTTCACCATCAACTTTGC 1250
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CTGTGCAAACGCCTTACTTGGTGCCCTTGACTATCTCAACAAGTTCACCATCAACTTTGC 1457
Query 1251 TGCAATAACAGGGGAAGCCTATTGCACCTCTGCGAAAATGACTTATGAGCTCTTAAGACG 1310
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1458 TGCAATAACAGGGGAAGCGTATTGCACCTCTGCGAAAATGACTTACGAGCTGTTAAGACG 1517
Query 1311 CAACCTACTGTCAGCTGTATTTGTGGAAACGGTTTCCACCAGAATCCTGACCGGAATCGT 1370
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1518 CAACCTACTGTCAGCTGTATTTGTCGAAACGGTTTCCACCAGAATCCTAACCGGAATAGT 1577
Query 1371 CTTTGTCCTCTCAGCCGCATATGCAGTCGCGACATGGGCTGTTCTGAGAGGCGTGAGCAA 1430
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 CTTTGTCCTGTCAGCCGCATATGCAGTCGCGACATGGGCTGTTCTGAGAGGAGTGAGCAA 1637
Query 1431 CCTGGGTATAGATTCGTACTTGGTGGCTATACTGGCGTGGCTGTTACTGATTGTGGTCTT 1490
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | ||
Sbjct 1638 CCTGGGTATAGATTCGTACGTGGTGGCTGTACTGGCGTGGGTGTTACTGATTGTGATATT 1697
Query 1491 GGCTTTCTTTGTACATGTTCTTGACGATGTGATAGACACAATCTATGTCTGTTACGCGAT 1550
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1698 GGCTTTCTTTGTACATGTTCTTGACGATGTGATTGACACAATCTATGTCTGTTACGCGAT 1757
Query 1551 TGATAGAGACAAAGGGGATGTATGTAAGCAGGAAGTTCACGAGGTGTATGTTCACTTGCC 1610
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1758 TGATAGAGACAAAGGGGATGTATGTAAGCAGGAAGTTCACGAGGTTTATGTTCACTTGCC 1817
Query 1611 TATAAGCAGAAGCACAAGATCTTCTCTAATCCCAACTGCTCTGAATGCATAG 1662
||| ||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1818 TATCAGCAGAAGCACAAGATCTTCTCTCATCCCAAATGCTCTTAATGCATAG 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5