BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327837
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38870.1 | Symbols: | F-box and associated interaction doma... 1321 0.0
> AT4G38870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:18132583-18133863 REVERSE LENGTH=1281
Length=1281
Score = 1321 bits (715), Expect = 0.0
Identities = 960/1077 (89%), Gaps = 21/1077 (2%)
Strand=Plus/Plus
Query 136 AGATT-CTTGTGCGTATCTAAGCTCTGGGCTTCCAGAATCCGT-AGCCGATATTTCATGA 193
||||| ||| || ||||||||||| |||||||| | ||||||| | ||| ||||||||||
Sbjct 214 AGATTCCTT-TGTGTATCTAAGCTATGGGCTTCTATAATCCGTGATCCG-TATTTCATGA 271
Query 194 AATTGTTTCTCAACGAGTCCTTAAAAAGACCCATAAGTCTTGTATTCGTATTCAGAG-AT 252
||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||||| |
Sbjct 272 AATTGTTCCTCAATGAGTCCTTGAAAAGACCCAAAAGTCTTGTATTTGTATTCAGAGCAC 331
Query 253 AATTCTCTGGGTTTAACCATCTCATCCGTTCACCTCAAAAGTACAC-CTGAAG-catcat 310
|| ||| |||||| || | |||||||||||||||| |||||||||| | | || |||||
Sbjct 332 AA-TCTTTGGGTTCAATCTTCTCATCCGTTCACCTTAAAAGTACACGC-G-AGATATCAT 388
Query 311 catcatcatcatcatcTTCTGCTTCTCCAATCATTTACCATGTGACTTTCCACAC-CAGA 369
|||||||||||||||||||||||||| |||||| |||||||||||||| | |||| || |
Sbjct 389 CATCATCATCATCATCTTCTGCTTCTTCAATCACTTACCATGTGACTTGCTACACTCA-A 447
Query 370 CAACGCACGACCATTGCTCCTTCTGTCCACGGTTTGATTTGCTATGGACCACCTTCTACC 429
||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 448 CAACGCATGACCATTTCTCCTTCCGTCCACGGTTTGATATGCTATGGACCACCTTCTAGC 507
Query 430 CTTGTCGTATATAACCCTTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 489
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CTCGTCATATATAACCCCTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 567
Query 490 AGGAGAGCCATAAACCAATACTTAGGCTATGATCCCATCAACAATGATTATAAAGTGTTG 549
||||||||||||||||||||| |||||||||||||| | || | ||||||||||| ||
Sbjct 568 AGGAGAGCCATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTG 627
Query 550 TGCATTACGAGAGGCATGCCTAAGCTGAGAAACAGACGCGGTTTAGCTGAGGAGATACAA 609
|||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||
Sbjct 628 TGCATTACGAGAGGCATGCCTATGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAG 687
Query 610 GTTTTGACATTGGGAACTCGAGATTCAT---GGAGGATGATTCAAGACATTATTCCTCCT 666
|||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||
Sbjct 688 GTTTTGACATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCT 747
Query 667 CACTCTCCTGTAACTGAGGAACTTTGCATCAATGGTGTTTTGTATTATCAAGCTTTTATT 726
||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 748 CACTCTCCTGTAAGTGAAGAACTTTGCATCAACGGTGTTTTGTATTATCGAGCTTTTATT 807
Query 727 GGCACAAATCTAACTAAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAACTTGAT 786
|||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 808 GGCACAAAACTAAATGAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGAT 867
Query 787 CTTATCAAAGGACCTTGCAACTTTCGTAGTTTTTCAAAGTTGACAAACTATGAGGGAAAG 846
|||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 868 CTTATCAAAGTACCTTGCAACTTTCGTAGTTTTTCAAAGTTGGCAAAATATGAGGGAAAA 927
Query 847 CTAGCTGTCATCTTCTATGAAAAGAAAGTC-AGTAGTATTATTGGTTTGTGGGTTCTACA 905
|| |||||||||||||||||||||||| | ||| ||||||||||||||||| |||| |
Sbjct 928 CTGGCTGTCATCTTCTATGAAAAGAAAA-CGAGTGGTATTATTGGTTTGTGGATTCTGGA 986
Query 906 AGATGCATCTAA-GGAGGAATGGTCGAAGAAGACCTTTGTTTTGCCTAATCTAGCTGCCT 964
|||||| ||||| || |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 987 AGATGCTTCTAATGG-GGAATGGTCGAAGAAGACTTTTGCATTGCCTAATCTAGCTGCCT 1045
Query 965 CAGCAACAAACTCGCATATTCTTAGGTTTCACAAGTTTCGCACCACTGACGCTGACACGG 1024
|| |||||||||||| |||||||| | |||| ||||| || || ||||||||||||||
Sbjct 1046 CATCAACAAACTCGCGTATTCTTAAGCTTCAAAAGTTCCGTACAACTGACGCTGACACAT 1105
Query 1025 GTGAGATTATTTTTACACCAACTTTTGTGCATTCATCACTATCCAGTGCTGTCTATTGTG 1084
||||||||||||| |||||| ||| || ||||||||||||||| |||||| | |||||||
Sbjct 1106 GTGAGATTATTTTCACACCATCTTATGCGCATTCATCACTATCTAGTGCTATTTATTGTG 1165
Query 1085 ATCTGAAG-AACAATAGAGTGAGAAATTTTGTAAAAGAAGGAACCACGGAGCATTATATA 1143
|||||||| || |||| ||||||||| ||||||||||||||| || ||| | ||| ||
Sbjct 1166 ATCTGAAGGAA-AATAAAGTGAGAAAATTTGTAAAAGAAGGATGGACAGAGAACTATCTA 1224
Query 1144 CGATGTCATGCAGACTCTGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1200
| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1225 CCATGTAATGCAGACTCAGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1281
Score = 180 bits (97), Expect = 3e-44
Identities = 124/137 (91%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGCTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGAAGGCAAAACGCAAAG 60
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 ATGAAGACTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGACGGCAAA-CGCAAAG 59
Query 61 GTGGCTGCTGGAGGGAGATCGATCTTCATCTTTCACGTTTCTCCAGCATGGAAACACAGA 120
|||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 60 GTGGCTGCCAGAGGGAGATCGATCGTCATCTTTCACGCC-CTCCACCATGGAAACACAGA 118
Query 121 GGAATAAGCTTACAAAG 137
| || ||| ||||||||
Sbjct 119 GAAAGAAGTTTACAAAG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5