BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327841
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:1814... 1014 0.0
AT2G21240.1 | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine ... 518 7e-146
> AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:18145351-18146873
REVERSE LENGTH=1068
Length=1068
Score = 1014 bits (549), Expect = 0.0
Identities = 731/812 (90%), Gaps = 39/812 (5%)
Strand=Plus/Plus
Query 29 TTGAAAGTAAGAGAATGGAGAGTGGTGGGCTGTATGAAAATGGGCGCTACAAGCCCGATT 88
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 76 TTGAAAGTAAGAGGATGGAGAGTGGTGGGCAGTATGAAAATGGGCGCTACAAGCCCGATT 135
Query 89 ACAACAAAGGGACACAATCTGTGAATATGGTGCCTCAGCATCAGATAAAGGAGCAACATA 148
|| ||||||| |||||||||||| | || ||| | || | || ||||||||||||||
Sbjct 136 ACTACAAAGGAACACAATCTGTG-A-AT-GTG-AT--GC--C-GAAAAAGGAGCAACATA 186
Query 149 ATGCATTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGGGATGCAGCAGTCA 208
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 187 ATGCATTGGTGATGAATAAGAAGATCATCTCCATCCTTGCTGAGAGGGACGCAGCTGTCA 246
Query 209 AGGAAATAAACGAAGCCGTAGCAGCAACAAAAGAAGCATTAGCCGCTCGTGATGAAGCAC 268
|||||| ||||||||| || |||||||| || |||||||||||| |||||||||||||||
Sbjct 247 AGGAAAGAAACGAAGCGGTTGCAGCAACTAAGGAAGCATTAGCCTCTCGTGATGAAGCAC 306
Query 269 TTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGAAAGTG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGAAAGTG 366
Query 329 CGTTAAATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTGTGCCAAGC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CGTTAAATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTGTGCCAAGC 426
Query 389 GTGGTGGTTCCCACAG-TTGTGTAACTGACGAAAGCCACTTACCTGCCCCTTCACCTATA 447
| ||||||||||| || || | ||||||| ||||||||||||||| ||||| ||||||
Sbjct 427 GCGGTGGTTCCCAAAGGTT-TATAACTGAAGAAAGCCACTTACCTAATCCTTCCCCTATA 485
Query 448 TCAACTATTCCACCTGAAGCAGCCAACACGAGACT-AGCCAAAAGGAAGAAAGAGAGTAA 506
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 486 TCAACTATTCCACCTGAAGCAGCCAACACGAGACCGA-CCAAAAGGAAGAAAGAGAGCAA 544
Query 507 GCAGGGAGCACGATCAAAGGGAAAGAAAGTGGGCGAGGATCTGAACCATCAAGTTGCTTC 566
||||||| | | | ||| | |||||||||||||||||| || |||||||||
Sbjct 545 GCAGGGA--A--A-----G--AAA-A---TGGGCGAGGATCTGAACCGTCCAGTTGCTTC 589
Query 567 TCCGGGAAAGAAAAGCAGAAAAGATTGGGACAGTTACGATGTCGGTTTAAACCTAGTCAC 626
||| ||||||||||||||||| |||||||||||| |||||||| | |||||||
Sbjct 590 TCCCGGAAAGAAAAGCAGAAAGGATTGGGACAGTAACGATGTC--------C-TAGTCAC 640
Query 627 ATTCGACGAGACGACAATGCCAGTGCCCATGTGCACTTGCACCGGGACTGCTCGTCAGTG 686
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GTTCGATGAGATGACAATGCCAGTGCCCATGTGCACTTGCACCGGGACTGCTCGTCAGTG 700
Query 687 TTACAAGTGGGGAAACGGCGGTTGGCAATCTTCTTGCTGCACAACCACTTTGTCTCAGTA 746
||| |||||||| || ||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 701 TTATAAGTGGGGCAATGGCGGCTGGCAATCATCTTGCTGCACAACCACTTTGTCTGAGTA 760
Query 747 TCCGCTCCCGCAGATGCCAAACAAGCGGCATTCTCGAGT-GGCCGGTAGGAAAATGAGCG 805
||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||| |
Sbjct 761 TCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTGGC-GGCAGGAAAATGAGTG 819
Query 806 GAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 837
||||||||||||||||||||||||||||||||
Sbjct 820 GAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 851
> AT2G21240.1 | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine
4 | chr2:9101316-9103050 REVERSE LENGTH=1282
Length=1282
Score = 518 bits (280), Expect = 7e-146
Identities = 652/827 (79%), Gaps = 43/827 (5%)
Strand=Plus/Plus
Query 36 TAAGAG-AATGGAGAGTGGTGGGCTGTATGAAAATGGGCGCTACAAGCCCGATTACAACA 94
|||||| ||||||| |||||| | |||||| |||| ||| | ||||||||||||| ||
Sbjct 185 TAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTTCA 244
Query 95 AAGG-GACACAATC--TGT-GAATATGGTGCCTCAGCATCAGATAAAGGAGCAACATAAT 150
|||| | ||||||| ||| ||||||| | || ||||||||||| ||||| |||||||||
Sbjct 245 AAGGTG-CACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAAT 303
Query 151 GCATTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGGGATGCAGCAGT-CAA 209
|| ||||||||||||||||||||||||||||||||||||||||| || || || || ||
Sbjct 304 GCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACAT 363
Query 210 GGAAATAAA-CGAAGCCGTAGCAGCAACAAAAG-AAGCAT-TAGCCGCTCGTGATGAAGC 266
| ||| ||| | |||| || | || | ||||| |||| | | || ||||| || |||||
Sbjct 364 G-AAAGAAATC-AAGCTGTCTCTGCTA-AAAAGGAAGC-TGTCGCTGCTCGGGACGAAGC 419
Query 267 ACTTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGA-AA 325
||| |||| || ||||||||||| ||||| |||||||| ||| | || |||| ||| ||
Sbjct 420 GCTTCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAA 479
Query 326 GTGCGTTAAA-TGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTG-TGC 383
||| ||| |||||||| | ||| |||||| | ||| |||| |||||| || ||
Sbjct 480 -TGC-TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTC-TGGTGG 536
Query 384 CAAGCGTGGTGGTTCCCAC-A--GTTGTG-TAACTGACGAAAGCCACTTACCTGCCC-CT 438
||| ||| || | | | ||| || || || ||| |||| || || ||
Sbjct 537 GAAGTGTGTTGATGGAGATGATTGTTTTGGTAT-TGGGGAACCCCACAAACTTGAAGTCT 595
Query 439 TCACCTATATCAACTATTCCACCTGAAGC-AGCCAACACGA-GAC--T-AGCCAAAAGGA 493
|| ||| | ||||||||||| ||||| | | | ||||||| | | | | |||||||
Sbjct 596 TC-CCTTTGTCAACTATTCCGCCTGAGGTTA-CAAACACGAAGGTGGTGAAC-AAAAGGA 652
Query 494 AGAAAGAGAGTAAGCAGGGAGCACGATCAAAGG-GAAAGAAAGTGGGCGAGGATCTGAAC 552
||||||||| ||||||||| | |||||||| |||| |||||||| || |||||||||
Sbjct 653 AGAAAGAGAACAAGCAGGGA-CT--ATCAAAGGTGAAA-AAAGTGGGTGAAGATCTGAAC 708
Query 553 CATCAAGTTGCTTCTCCGGGAAAGAAAAGC-AGAAAAGATTGGGACAGTTACGATGTCGG 611
| || |||| || |||| ||||||||| | |||| ||||||||||||| | ||||||||
Sbjct 709 CGTCGAGTTCCTGCTCCTGGAAAGAAAT-CTAGAACAGATTGGGACAGTCAAGATGTCGG 767
Query 612 TTTAAACCTAGTCACATTCGACGAGACGACAATGCCAGTGCCCATGTGCACTTGCACCGG 671
||| ||| ||||||| ||||| |||||||||||||| || |||||||| | ||||| ||
Sbjct 768 TTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGG 827
Query 672 GACTGCTCGTCAGTGTTACAAGTGGGGAAACGGCGGTTGGCAATCTTCTTGCTGCACAAC 731
|| | |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 828 CTCTACGCGTCAGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAAC 887
Query 732 CACTTTGTCTCAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCTCG-AGTGGCCG 790
||| || || |||||||| | |||||||||||||||||| |||||||||| | ||| ||
Sbjct 888 CACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGA-TGGGCG 946
Query 791 GTAGGAAAATGAGCGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 837
|||||||||||||||||| || ||||| || ||||| || ||||||
Sbjct 947 GTAGGAAAATGAGCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5