BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327853
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39020.1 | Symbols: | SH3 domain-containing protein | chr4:... 409 4e-113
> AT4G39020.1 | Symbols: | SH3 domain-containing protein | chr4:18182315-18184340
FORWARD LENGTH=510
Length=510
Score = 409 bits (221), Expect = 4e-113
Identities = 252/267 (94%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 856 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 303
Query 916 TACTTCTTAGGAGAGGTCATGTTTCCGTATCAAGCTGAATCTGATTTTGAGCTCACCTTA 975
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||
Sbjct 304 TATTTCTTAGGAGAGGTCATGTTTCCATATCAAGCTGATTCAGATTTTGAGCTCAGCTTA 363
Query 976 TCAGTTGGAGAGTATGTTGTTATCAGAGAGGTAGTGAGTAGCGGGTGGGCAGAAGGAGAA 1035
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 364 TCAGTTGGAGACTATGTTGTTATCAGAGAGGTAGTGAGTAGCGTGTGGGCAGAAGGAGAA 423
Query 1036 TGTAAAGGCAAAGCGGGGTGGTTTCCTTATGAT-TACATCGAAAGAAGGGATCGTGTCCT 1094
||||||||||| ||||| |||||| |||| || |||||||||||||||||||||||| |
Sbjct 424 TGTAAAGGCAACGCGGGTTGGTTTACTTAC-ATCTACATCGAAAGAAGGGATCGTGTCTT 482
Query 1095 CGCAACTAAGGTCATCGAGGTGTTCTA 1121
||||||||||||||||||||| |||||
Sbjct 483 CGCAACTAAGGTCATCGAGGTCTTCTA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5