BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327864

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39130.1 | Symbols:  | Dehydrin family protein | chr4:182281...   479    1e-134


> AT4G39130.1 | Symbols:  | Dehydrin family protein | chr4:18228118-18228852 
REVERSE LENGTH=529
Length=529

 Score =  479 bits (259),  Expect = 1e-134
 Identities = 350/392 (89%), Gaps = 13/392 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGGATCTGAAAGACGAACGAGGAAACCCGATCTATCTCACAGACGAACACGGGAAG  60
            ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||| ||
Sbjct  9    ATGGCGGATCTGAAAGACGAACGAGGAAATCCGATATATCTCACGGACGCACACGGGGAG  68

Query  61   CCGGCTCAGCTCATGGATGAGTTTGGTAACGCCATGCACCTT-AAAGGTGTGGCAACCAC  119
            || |||||||||||||| ||||||||||||||||||||  || | |||||||||||||||
Sbjct  69   CCAGCTCAGCTCATGGACGAGTTTGGTAACGCCATGCA-TTTGACAGGTGTGGCAACCAC  127

Query  120  CGTTCCTCACCTTAAGGAGAGCAGCTACACCGGTCCACACCCAATCACTGCCCCTGTCAC  179
            |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  128  CGTTCCTCACCTGAAGGAGAGCAGCTACACAGGTCCACACCCAATCACTGCCCCAGTCAC  187

Query  180  CACCACCAATACTCCTCACCACGCACAACCAATCTCCGTGTCCCACGACCCTCTTCAAGA  239
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  188  CACCACCAATACTCCTCACCACGCACAACCTATTTCCGTGTCCCACGACCCTCTTCAAGA  247

Query  240  CCATGATCTCCGCTGGTTCGGCACCAACTT-GCCGGAGGAGGACTGG-GA-GGATGGTGA  296
            ||||||||||||||||||||||||||  || | |||||||| | ||| || ||| | | |
Sbjct  248  CCATGATCTCCGCTGGTTCGGCACCAG-TTCGACGGAGGAGAA-TGGCGAAGGA-G-T-A  302

Query  297  AGGAGCAAGGAGTAAAACTA-CGGAAGAAACTAAATCGAAGCTAGGCGTCAACAACCCAT  355
             |||| ||  | ||| | || |||| ||||| |||||||||||||||||| |||| ||||
Sbjct  303  GGGAGGAAA-ACTAATA-TAACGGATGAAACAAAATCGAAGCTAGGCGTCGACAAGCCAT  360

Query  356  CAGCTGCAACCGTAACAGGAACAGGAACAGGA  387
            ||||||| |||||||||||| ||||| |||||
Sbjct  361  CAGCTGCGACCGTAACAGGATCAGGATCAGGA  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5