BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327879
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superf... 608 3e-173
> AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18285205-18286302 REVERSE LENGTH=1098
Length=1098
Score = 608 bits (329), Expect = 3e-173
Identities = 550/648 (85%), Gaps = 50/648 (8%)
Strand=Plus/Plus
Query 74 GTTTCCAAAGTAAATTCCGGTCTCTCATTGCCTCAACGGATCTTCAAGAGCTCAGATCAT 133
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 115 GTTTCC-AAG-AAATTCCGGTCTCTCATTGCCTCAACGGAGCTTCAAGAGCTTAGATCAT 172
Query 134 TCTTAGGTTGCACTAGCAGTGGTCTTTATGTGTGTTTACTGCCCCGTACCAACTATAACA 193
|||||||||| ||||||||||||||||| |||||||||| | |||||| || || |
Sbjct 173 TCTTAGGTTGTACTAGCAGTGGTCTTTACGTGTGTTTACGGTTCCGTACGAA-TA-CTGA 230
Query 194 CTGACACACGAATTTGGTTCACCCTCCGCCAAAAAATAAACAGCTGCACCAAAATTTTGG 253
| ||| || |||||| |||||||||||||||||||||| ||| || ||||||||||||
Sbjct 231 -TTACAGACAAATTTGTTTCACCCTCCGCCAAAAAATAAGTAGCAGCGCCAAAATTTTGG 289
Query 254 TCCCAATTAT-ATCTTCTT-ATTCTCCTTTTGACTATAGGTCGGGTGTTGT---GG-TGG 307
|||||| ||| ||| |||| |||||||||||||||| || || |||||||| || |||
Sbjct 290 TCCCAA-TATCATC-TCTTGATTCTCCTTTTGACTACAGATCAGGTGTTGTAGCGGTTGG 347
Query 308 -T-TGAT-TCTA----A-T-AT--A-G-----T-AAT-AT-CT--AT-GT-TATTGGTCA 343
| |||| |||| | | | | | | ||| || | || || || |||||
Sbjct 348 TTCTGATATCTATGCTATTGGTGGACGAAACTTAAATAATAGTGCATCGTCTA-AGGTCA 406
Query 344 TGGTCATGGACTGCCGTTCTCATACATGGCGTGAGGCTCCAAGCATGCGCGTGGCACGTG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TGGTCATGGACTGCCGTTCTCATACATGGCGTGAGGCTCCAAGCATGCGCGTGGCACGTG 466
Query 404 ACAACTCCCCATCTACTTGCGTCCTTAATGGGAAAATATATGTAATAGGAGGCTGCAAGA 463
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATGACTTTCCATCTACTTGCGTCCTTAATGGGAAAATATATGTAATAGGAGGCTGCAAGA 526
Query 464 ATCTCGATTCAACAAATTGGATTGAGGTTTTCGATACGAAGACCCAAACATGGGAGTTTT 523
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 ATCTCGATTCAACAAATTGGATTGAAGTTTTCGATACGAAGACCCAAACATGGGAGTTTT 586
Query 524 TGCAGATTCCTAGCGAAGAGATATGCAGAAGTTTTAAATACAAAAGT-GTAGTGTATAAA 582
|||||||||||| ||||||| |||||||| ||||||| ||||||| | |||| |||||||
Sbjct 587 TGCAGATTCCTAACGAAGAGGTATGCAGAGGTTTTAATTACAAAA-TCGTAGGGTATAAA 645
Query 583 GAAACTGTATACGTAAGTTGTTTAGACGAGAATTAT-GTG-A-CTGACATGACTTACAAG 639
||| || | ||||||||| ||||| | ||| || ||| | || |||||||||| ||
Sbjct 646 GAAGCTATCCACGTAAGTTCATTAGA--A-AATAATCGTGCAACTTTCATGACTTACGAG 702
Query 640 ATACATAAAGGAAGATGGAGAGAGGCACACTTAAT-GTTCAA-TCATG 685
||||| ||||| |||||||||||| |||||||| | ||| || |||||
Sbjct 703 ATACACAAAGGTAGATGGAGAGAGCCACACTTA-TCGTT-AAGTCATG 748
Score = 130 bits (70), Expect = 3e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAGGAAGAAGAATCACAGATGACGTTTTCGATGCTTCCTGATAATTTGGTATTA 60
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 7 ATGTCGAAGGAAGATGAGTCACAGATGACGTTTTCGATGCTTCCTGATGATTTGGTATTA 66
Query 61 AACTGTTTAGC--GTGTTTCCAAAGT 84
||||||||||| |||||||||||||
Sbjct 67 AACTGTTTAGCCCGTGTTTCCAAAGT 92
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5