BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327889
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39390.1 | Symbols: ATNST-KT1, NST-K1 | nucleotide sugar tra... 1507 0.0
AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family p... 366 2e-100
> AT4G39390.1 | Symbols: ATNST-KT1, NST-K1 | nucleotide sugar transporter-KT
1 | chr4:18315575-18318043 FORWARD LENGTH=1504
Length=1504
Score = 1507 bits (816), Expect = 0.0
Identities = 957/1020 (94%), Gaps = 29/1020 (3%)
Strand=Plus/Plus
Query 1 ATGAGTGCAACAAGC-AGCAAGACGGATCAAAAAGCGGCATTAGACATTGCATCATGGCT 59
|||||||| || | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 314 ATGAGTGCTACTA-CAAGCAAGACGGATCAGAAAGCGGCATTAGACATTGCATCATGGCT 372
Query 60 ATTCAATGTTGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTA 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTA 432
Query 120 TGGCTTTAGTTTCGCTACAACATTAACCGGTTTGCATTTCGGAACAACCACATTGTTGAC 179
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 TGGCTTTAGTTTCGCTACTACATTAACCGGTTTGCATTTCGGAACAACGACATTGTTGAC 492
Query 180 AACTTTCTTGACATGGCTTGGTTATATCCAACCTTCTCAGCTTCCTTGGCCTGATCTTTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AACTTTCTTGACATGGCTTGGTTATATCCAACCTTCTCAGCTTCCTTGGCCTGATCTTTT 552
Query 240 GAAATTCGTTTTGTTCGCTAACTTCTCCATTGTTGGGATGAACGTGAGTCTCATGTGGAA 299
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 553 GAAATTCGTTTTGTTCGCTAACTTCTCTATCGTTGGGATGAACGTCAGTCTCATGTGGAA 612
Query 300 TTCTGTTGGATTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTTTTCTAGA 359
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 TTCTGTTGGCTTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTCTTCTAGA 672
Query 360 AGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTCT 732
Query 420 TGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTCAACGGATTTCTCGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 733 TGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTCAACGGATTTCTAGC 792
Query 480 TGCTGCTATTGCTGTCTGGAGCACCGCGCTCCAGCAATACTATGTACATTATCTACAACG 539
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 793 TGCCGCTATTGCTGTCTGGAGCACCGCGCTTCAGCAATACTATGTACATTATCTACAACG 852
Query 540 GAAATATTCACTCGGTTCTTTCAATTTACTGGCGCATACCGCTCCAGTTCAAGCTGCATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 853 GAAATATTCACTCGGTTCTTTCAATTTACTGGCGCATACCGCTCCAGTTCAAGCTGCGTC 912
Query 600 ATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACAAACCAAAGAGTGGATGCATA 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 913 ATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTGGATGCATA 972
Query 660 CAACTTTTCATTTGTATCTCTGCTCTACCTAACCCAATCTTTTGGGCAGTTCTTCTTAAT 719
|||| | ||| || | || || | | || | ||||||||||||
Sbjct 973 CAAC---T--TTT-CAT-T-TG---TA--T----C--TC---T-----GTTCTTCTTAAT 1005
Query 720 ACTATCGTGCAGTATAGCGGTCGGGACCAATCTCAGCCAATTCATCTGTATCGGAAGGTT 779
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1006 ACTCTCGTGCAGTATCGCGGTTGGGACCAATCTCAGCCAATTCATCTGTATTGGAAGATT 1065
Query 780 CACGGCGGTGTCTTTTCAAGTACTTGGTCACATGAAGACAATTCTGGTTTTGGTTTTGGG 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACAATTCTGGTTTTGGTTTTGGG 1125
Query 840 ATTCACTTTCTTTGGTAAGGAAGGTTTAAACCTACAAGTAGTGCTTGGAATGCTCATTGC 899
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1126 ATTCACTTTCTTCGGTAAGGAAGGATTAAACCTACAAGTAGTGCTTGGAATGCTGATTGC 1185
Query 900 GATCCTAGGTATGATCTGGTACGGTAATGCATCTTCTAAACCGGGCGGTAAAGAGCGCCG 959
|| || |||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1186 TATACTCGGTATGATCTGGTACGGTAATGCATCTTCTAAACCGGGTGGTAAAGAACGTCG 1245
Query 960 TAGCCTCTCTATTCCTATAACCAAGTCACAGAAACTATCTGAAACAAACGAATCTGATGA 1019
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TAGCCTGTCTATTCCCATAACCAAGTCACAGAAACTATCTGAAACAAACGAATCTGATGA 1305
> AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr4:6175176-6177293 REVERSE LENGTH=1388
Length=1388
Score = 366 bits (198), Expect = 2e-100
Identities = 472/601 (79%), Gaps = 31/601 (5%)
Strand=Plus/Plus
Query 61 TTCAATGTTGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTAT 120
||||||||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||
Sbjct 199 TTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTAT 258
Query 121 GGCTTTAG-TTTCGCTACAACATTAACCGGTTTGCATTTCGGAACAACCACATTGTTGAC 179
|||||||| ||| |||||||| ||||||||||| ||||||| || || || ||| ||||
Sbjct 259 GGCTTTAGCTTT-GCTACAACGTTAACCGGTTTACATTTCGCCACTACGACGTTGATGAC 317
Query 180 AACTT-TCTTGACATGGCTT-GGTTATATCCAACCTTCTCAGCTTCC-TTGGCCTGATCT 236
||| | || | ||| || || ||||| ||||||||||| ||||| || | || ||
Sbjct 318 G-CTTGTTTTAAGATGT-TTAGGATATATACAACCTTCTCATCTTCCATTTACA-GAGCT 374
Query 237 T-TTGAAATTCGTTTTGTTCGCTAACTTCTCCATTGTTGGGATGAACGTGAGTCTCATGT 295
| || || || || |||| ||||| || || |||||||| ||||| || ||||| ||||
Sbjct 375 TCTT-AAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGT 433
Query 296 GGAATTCTGTTGGATTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTTT-T 354
|||| |||||||| || || |||||||| ||||| || ||||| || || || || || |
Sbjct 434 GGAACTCTGTTGGGTTTTATCAGATTGCAAAGCTTAGCATGATTCCTGTATCATGCTTGT 493
Query 355 CTAGAAGT--TATGCTTGACAATG-T-CAGGTATTCAAGAGATACAAAGCTTAGCATTTT 410
| ||||| ||| |||| || | | | | || |||||||||||||| |||||||||
Sbjct 494 -TGGAAGTAGTAT--TTGATAA-GATTC-GTTACTCAAGAGATACAAAACTTAGCATTG- 547
Query 411 G--TTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTC-AA 467
| || ||||||| |||||||| || |||||||| || ||||||||||| || | | ||
Sbjct 548 GACTT-GTTCTTGTTGGTGTTGGTGTTTGTACTGTTACTGATGTTAGTGTTAA-CACCAA 605
Query 468 CGGATTTCTCGCTGCTGCTATTGCTGTCTGGAGCACCGCGCTCCAGCAATACTATGTACA 527
|| ||| | |||||| | ||||||| ||||| || || | || ||||||||||||||
Sbjct 606 AGGTTTTGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCTTTGCAACAATACTATGTACA 665
Query 528 TTATCTACAACGGAAA-TATTCACTCGGTTCTTTCAATTTACTGGCG-CATACCGCTCCA 585
||||||||| || ||| || || || | || ||||| |||||| | ||||| ||||||
Sbjct 666 TTATCTACAGCG-AAAGTACTCGCTTAGCTCATTCAACCTACTGG-GTCATACTGCTCCA 723
Query 586 GTTCAAGCTGCATCATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACAAACCAA 645
| ||| |||||| | || ||| | ||||| |||||||| ||||| ||||||||| || ||
Sbjct 724 GCTCAGGCTGCAACGTTATTGATAGTCGGTCCATTTCTCGACTATTGGTTGACAGAC-AA 782
Query 646 A 646
|
Sbjct 783 A 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5