BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327908
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 643 0.0
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 195 1e-48
AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 156 5e-37
AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 106 5e-22
> AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18382291-18383803 REVERSE LENGTH=1513
Length=1513
Score = 643 bits (348), Expect = 0.0
Identities = 442/487 (91%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 342 TAAGCCAAGTGGGCATGTTATGGCGGCAATCCCAATGCCCAATTCTCCTCCTGTACACCG 401
||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |
Sbjct 366 TAAGCCAAGTGGGCATGTTATGGCGGCAATCTCAATCCCCAATTCTCGTCCTGTACATTG 425
Query 402 CTCTGGTCTGGTTACGGTTGGTTCTGATATTTACAACATTGGCTGG-TCCATCATCAATG 460
||||||||| ||| | |||||||||||||| |||||||||||| || |||||||||||||
Sbjct 426 CTCTGGTCTCGTTGCTGTTGGTTCTGATATATACAACATTGGC-GGATCCATCATCAATG 484
Query 461 ACCACTCCTCTAGCGTCTCGATTTTGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAA 520
| ||||||||||| |||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct 485 AACACTCCTCTAGTGTCTCGATATTGGACTGCCGGTATCACACGTGGCGTGATGCTCCAA 544
Query 521 ACATGCTGGTGGAGCGGTTTTTC-CCTGCAGCCAATGTCATTGATGGAAAGATATATGTT 579
||||||||||||||||| ||| | |||||||||||| |||||||| ||||||||||||
Sbjct 545 ACATGCTGGTGGAGCGG-AATTCACATGCAGCCAATGTTATTGATGGGAAGATATATGTT 603
Query 580 GCAGGAGGCAGCAAAGACTCTAATTCCTCCAATTGGATGGAAGTTTTCGATCTAAAAACC 639
||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 604 GCAGGAGGCAGCAGAGACTCCAATTCCTCCAATTGGATGGAAGTTTTCGATATAAAAACC 663
Query 640 CAAACTTGGGAACTTGTGTTAAACCCTAAT-GCAGATGGATGCGAAAGTCGTATATGCAA 698
||||||||||| | |||| |||||||| || ||||||||||| || || |||||| ||||
Sbjct 664 CAAACTTGGGAGCCTGTGCTAAACCCT-ATCGCAGATGGATGTGACAGACGTATACGCAA 722
Query 699 GAGCGCAGTGATTGACGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 758
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GAGCGCAGTGATTGAAGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 782
Query 759 CAACCCAGGAATAAATAAATGGGAAAG-GATAGGAGCAGTGAATTATTTGAATTTAGGAT 817
||||||| ||||| ||||||||||| | |||||||| ||||||||||||| |||||||||
Sbjct 783 CAACCCAAGAATAGATAAATGGGAA-GCGATAGGAGAAGTGAATTATTTGGATTTAGGAT 841
Query 818 GGGAATG 824
||| |||
Sbjct 842 GGGTATG 848
Score = 448 bits (242), Expect = 8e-125
Identities = 284/305 (93%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTCGCCGGTGAAGAAAAGGGAGAAGAAGACGACGACGTCGCCGATACTCTCACCG 60
||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 64 ATGTCATCGCCGGTGAAGAAGATGAAGAAGAAGACGACGACGTCGCCGATACTCTCACCG 123
Query 61 ACGCCGCAATCGATGCAGATTCCATCACTTCCCGTTGATTTGCTAATAAGTATCATCGCC 120
|||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 124 ACGCCGCATTCGACCCAGATTTTATCACTTCCTGTTGATTTGCTAATAAGTATCCTCGCC 183
Query 121 CGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTC 243
Query 181 CTTGCATCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGACGTACCGAGAGCTGTCTC 240
|||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 244 ATTGCTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGCCGCACAGAGAGCTGTCTC 303
Query 241 TATCTGTGCTTAGGGTTTACTTCTAACTCTAACCCTCGCTGGTTCACTCTCTGCCGAAAA 300
||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 304 TATCTGTGCTTAGGGATCCCTTCTGACTTTAACCCTCGCTGGTTCACTCTCTGCCGAAAA 363
Query 301 CCTAA 305
|||||
Sbjct 364 CCTAA 368
Score = 407 bits (220), Expect = 1e-112
Identities = 275/302 (91%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 831 AGACGGAATCAAATTGTATGACTCTAAGATAGGACACTGGATGAAGCTGAAGGGATTGGA 890
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 896 AGACGGAATCAAATTGTATGACTCTAAGATAGGATGCTGGATGAAGCTCAAGGGTTTGGA 955
Query 891 AGGATTGCCTAAGTTTGCTAGTGATTGTTGTGTTAGATTAGCGGATTATGGTGGAAAAAT 950
|||||||||| ||||||||||| ||| || |||||||||||||||||||||||| || ||
Sbjct 956 AGGATTGCCTGAGTTTGCTAGTTATTCTTATGTTAGATTAGCGGATTATGGTGGGAAGAT 1015
Query 951 GGCTGTTTTGTGGGGCAATTTACCTACTACTGGCGATAAGAACAAGGTGATTTGGTGTGC 1010
||| |||||||||| ||| ||||||||||||||| |||| |||| |||||||||||||||
Sbjct 1016 GGCGGTTTTGTGGGACAAGTTACCTACTACTGGCAATAATAACATGGTGATTTGGTGTGC 1075
Query 1011 GGTAATCACACTTGAAAAGC-CTGACAATGAAAAGATTTGGGGCAAGGTTGAGTGGCTTG 1069
|||||||||||||||||||| | |||||||||| |||||||| | |||||||||| |||
Sbjct 1076 GGTAATCACACTTGAAAAGCGCC-ACAATGAAAACATTTGGGGGAGGGTTGAGTGGTTTG 1134
Query 1070 ATGCTGTGCTTACAGTCCCTGAGTCTTATGAATTCGTGTGTGCTTGTGCCGCTACTGTTT 1129
||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||||
Sbjct 1135 ATGCTGTGCTTACAGTCCCTGAGCCTTATGAATTCGTGTGTGCTCGTTCCGCTAATGTTT 1194
Query 1130 GA 1131
||
Sbjct 1195 GA 1196
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 195 bits (105), Expect = 1e-48
Identities = 361/478 (76%), Gaps = 43/478 (9%)
Strand=Plus/Plus
Query 81 TCCATCACTTCCCGTTGATTTGCTAATAAGT-ATCATCGCCCGCGTCTCGAGATTGGACT 139
||| |||||||||| ||||||| | || || |||||||| |||||||| | ||| |||
Sbjct 81 TCCGTCACTTCCCGATGATTTGGT-ATTGGTCATCATCGCACGCGTCTCAATATTATACT 139
Query 140 ACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTCCTTGCATCACCGGAGCTTT 199
| || |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 140 ATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGCTTT 199
Query 200 ACGAGACTC-GGTCACTCTTAGGACGTACCGAGAG-CTGTCTCTATCTGTGCTTAGGGT- 256
|| || || |||||||||| || || | ||||| | |||||||| ||||| || |
Sbjct 200 ACAAGG-TCAGGTCACTCTTGGGCCGCAGGGAGAGTC-GTCTCTATGTGTGCATAAA-TA 256
Query 257 T-TACTTCTAACTCTAA-C--CC-TCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAA 311
| || |||| | | || | || | |||||||||| |||||||| ||||| ||||||
Sbjct 257 TGTA-TTCTTA-TAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCGAA- 313
Query 312 CTTAACCAACAACATGAAG-AAGAAG-ACGAATA-AGC-CAAGTGGGCATGT-TATGGCG 366
| ||| ||| || | || || ||| | || | || ||||||| |||| | ||||
Sbjct 314 C--AAC-AAC--CA-GTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCT-TGGCA 366
Query 367 -GCAATCCCAATGCCCAATTCTCCTCCTGTACACCGC--TCTGGTCTGGTTACGGTTGGT 423
| ||||||||| ||| |||||||| || || | | | | | || | ||||||||
Sbjct 367 AG-AATCCCAATTCCCCATTCTCCTT-TG-ACTCAGAGATATAGCCTCGCGGCGGTTGGT 423
Query 424 TCTGATATTTACAACATTGGC-TGGTCCA--T-C-ATCAAT-GACCACTCCTCTAGCGTC 477
||| |||| || ||||||||| | ||| | | | || | |||| |||||||| |||
Sbjct 424 TCTAATATCTATAACATTGGCGTAA-CCAGATACCACCATTTGACC--TCCTCTAGTGTC 480
Query 478 TCGATTTTGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAAACATGCTGGTGGAGC 535
| | || |||| || |||||||||||||||||| | ||||||| | ||| ||||||||
Sbjct 481 TGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGC 538
> AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18389436-18390539 REVERSE LENGTH=1104
Length=1104
Score = 156 bits (84), Expect = 5e-37
Identities = 342/461 (74%), Gaps = 39/461 (8%)
Strand=Plus/Plus
Query 81 TCCATCACTTCCCGTTGATTTGCTAATAAGTAT-CATCGCCCGCGTCTCGAGATTGGACT 139
||| |||||||| | |||||| || | || | | | || || || ||||||||| | |
Sbjct 42 TCCTTCACTTCCAGAAGATTTGGTAGTGAG-CTGCTTAGCTCGTGTGTCGAGATTGTATT 100
Query 140 ACCCAATTCTCT-CTCTCGTCTCCAAGAGCTTTCGAT-CTCTCCTTGCATCACCGGAGCT 197
|||| | ||||| || | |||||||||||||| || | || | |||| ||||| || ||
Sbjct 101 ACCCGACTCTCTCCT-TAGTCTCCAAGAGCTTCCGCTCCT-TGATTGCTTCACCAGATCT 158
Query 198 TTACGAGACTCGGTCACTCTTAGGACGTACCGAGAGCTGTCTCTATCTGTGCTTAGGGTT 257
||| ||||||| || || ||||| || |||||||| |||||||||||||||||| |
Sbjct 159 CTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGTCTCTATCTGTGCTTA-CG-A 216
Query 258 TACT-T-CT-AACTCTAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAACTT 314
|||| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TACTCTCCTGAA-GATAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAG--- 272
Query 315 AACCAACAACATG-AAGAAGAAGACGAATAAGCCAAGTGGGCA-TGTTATGGCGGCAATC 372
|||| | | | | ||| |||||| | | || ||||||| || | || ||| | |||
Sbjct 273 AACC--CTA-A-GCAAGGAGAAGA--A-TGAGTCAAGTGG-CAATCTTCTGGTTCCGATC 324
Query 373 CCAATGCC-CAATTCTCCTCCTGTACACCGCTCTGGTC-TGGTTACGGTTGGTTCTGATA 430
||||| | ||| ||||||||| | | | ||| | | | || | |||||||| ||
Sbjct 325 CCAAT-CATCAACTCTCCTCCTCTGGAATGGTCTAG-CATCGTCGCTGTTGGTTCACATC 382
Query 431 TTTACAACATTGGCTGGTCC-ATC-ATCAATGA-CCACTCCTCTAGCGTCTCGATT--TT 485
| ||| |||| | || || ||| | | || ||| | ||||| |||||| || ||
Sbjct 383 TCTACGCCATTAAC-GGACCTATCGAAGA-TGCTCCA-TGCTCTAACGTCTCC-TTCCTT 438
Query 486 GGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAAACATGC 526
| ||||||| |||||||| |||| ||||||||||| |||||
Sbjct 439 G-ACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGC 478
> AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2991655-2992679 REVERSE LENGTH=936
Length=936
Score = 106 bits (57), Expect = 5e-22
Identities = 152/197 (77%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 59 CGACGCCGCAATCGA-TGCAGATTCCATCACTTCCCGT-TGATTTGCTAAT-AAGTATCA 115
|||||||| ||| || | || | ||| ||| ||||| | |||||| ||||| | |||
Sbjct 154 CGACGCCGGAATTGACT-CATAATCCGTCAATTCCC-TATGATTTTCTAATGCA-CATCG 210
Query 116 TCGCCCGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGAT 175
|||| || || | |||||| |||| | |||||| ||||||||||||||||||||||
Sbjct 211 TCGCATGCATCCCAAGATTGTACTA--TGAGTCTCTCACTCGTCTCCAAGAGCTTTCGAT 268
Query 176 CTCTCCTTGCATCACCGGAGCTTTACGAGACTC-GGTCACTCTTAGGACGTACCGAGAGC 234
||||||| || ||||| ||||||||| || | |||||| || || || || |||||
Sbjct 269 CTCTCCTAGCTTCACCAGAGCTTTACAAGG-TAAGGTCACAGTTGGGCCGCACAGAGAGT 327
Query 235 TGTCTCTATCTGTGCTT 251
||||||||| | |||||
Sbjct 328 TGTCTCTATGTTTGCTT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5