BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327935
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39830.1 | Symbols: | Cupredoxin superfamily protein | chr4... 2750 0.0
> AT4G39830.1 | Symbols: | Cupredoxin superfamily protein | chr4:18478929-18481343
FORWARD LENGTH=2082
Length=2082
Score = 2750 bits (1489), Expect = 0.0
Identities = 1665/1751 (95%), Gaps = 7/1751 (0%)
Strand=Plus/Plus
Query 1 ATGATGAGACAAAAGAGATCATTAGACACAATTCATGTCTTCAATCTTATGGTCCTCTGT 60
|||||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 175 ATGATGAGACCGAAGAGATCATCAGACACAGTCCATGTCTTCAATCTTATGGTCCTCTGT 234
Query 61 TTCATCGCTCTGTTTTCTTCTTCCGTCCT-TGGCCAGGGAAAGATCCGAAGATTCAAATG 119
||||| || ||||||| |||||||||||| | | |||||||||||||| |||||||||||
Sbjct 235 TTCATTGCCCTGTTTTTTTCTTCCGTCCTCT-GTCAGGGAAAGATCCGGAGATTCAAATG 293
Query 120 GGAAGTGAAGTACGAGTTCAAGTCACCGGATTGTTTCGAGAAGCTAGTAATCACAGTCAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 GGAAGTGAAGTACGAGTTCAAGTCACCGGATTGTTTCGAGAAGCTAGTAATCACAATCAA 353
Query 180 TGGTAAGTTTCCAGGTCCCACCATTAAAGCTCAACAAGGTGACACCATTGTTGTTGAGCT 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 354 TGGTAAGTTTCCAGGTCCCACCATTAAAGCTCAACAAGGTGACACCATCGTTGTCGAGCT 413
Query 240 CAAGAATAGCTTCATGACTGAAAACGTCGCTGTCCATTGGCATGGAATCCGACAGATTAG 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 414 CAAGAATAGCTTCATGACTGAAAATGTCGCTGTCCATTGGCATGGAATCCGACAGATTGG 473
Query 300 GACTCCATGGTTCGATGGAGTAGAAGGTGTTACTCAATGTCCAATTCTTCCTGGAGAAGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GACTCCATGGTTCGATGGAGTAGAAGGTGTTACTCAATGTCCAATTCTTCCTGGAGAAGT 533
Query 360 CTTCACTTACCAATTCGTCGTTGATAGACCTGGTACATACATGTATCATTCACACTATGG 419
||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 CTTCATTTACCAATTTGTCGTTGATAGGCCTGGTACATACATGTATCATTCACACTATGG 593
Query 420 GATGCAGAGAGAATCTGGATTAATCGGAATGATTCAAGTTTCTCCTCCGGTCACAGAGCC 479
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 GATGCAGAGAGAGTCTGGATTAATCGGAATGATTCAAGTTTCTCCTCCGGCCACAGAGCC 653
Query 480 CGAACCGTTTACATACGATTATGACCGGAA-TGTTTTGTTAACAGATTGGTATCACAAAA 538
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 654 CGAACCGTTTACATACGATTATGACCGGAACT-TTTTGTTAACTGATTGGTATCACAAAA 712
Query 539 GCATGTCAGAGAAAGCCACCGGTTTAGCATCAATACCCTTCAAGTGGGTCGGTGAGCCAC 598
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 GTATGTCAGAGAAAGCCACCGGTTTAGCATCCATACCCTTCAAGTGGGTCGGTGAGCCAC 772
Query 599 AATCGCTTTTGATACAAGGAAGAGGAAGATTCAACTGCTCAAACAACCTAACCACTCCTC 658
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AATCGCTTATGATACAAGGAAGAGGAAGATTCAACTGCTCAAACAACCTAACCACTCCTC 832
Query 659 CAAACTTAGTGTCTGGCGTCTGTAACGTCTCAAACGCTGATTGCTCGCGTTTAATTCTTA 718
||| |||||||||||| || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 833 CAAGCTTAGTGTCTGGAGTATGTAACGTCTCAAACGCTGATTGTTCGCGTTTTATTCTTA 892
Query 719 TTGTGATTCCCGGAAAGACATACAGGCTTCGAATCGGTAGCTTGACGGCTCTCTCTGCTC 778
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 893 CGGTGATTCCCGGAAAGACATACAGGCTTCGAATAGGTAGCTTGACGGCTCTCTCTGCTC 952
Query 779 TCAGTTTCCAAATTGAGGGACATAATTTGACGGTTGTTGAAGCAGACGGACACTACGTAG 838
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 TCAGTTTCCAAATCGAGGGACATAATTTGACAGTTGTTGAAGCAGACGGACACTACGTAG 1012
Query 839 AACCATTCACGGTGAAGAATCTCTTCATATACTCTGGCGAAACTTATTCCGTACTTCTCA 898
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1013 AACCATTCACGGTGAAGAATCTCTTTGTATACTCCGGCGAAACTTATTCCGTACTTCTCA 1072
Query 899 AGGCAGATCAAAACCCTAGACGAAACTATTGGATCACCACAAGCATAGTTAGCCGTCCGG 958
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1073 AGGCAGATCAAAACCCTCGACGAAACTATTGGATCACCTCAAGCATAGTTAGCCGTCCGG 1132
Query 959 CAACAACTCCACCGG---TCGCCGTACTCAACTACTACCCGAATCACCCACGACGGCGTC 1015
| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1133 CGACAACTCCACCGGCAACCGCTGTACTCAACTACTACCCGAACCACCCACGACGGCGTC 1192
Query 1016 CTCCCACGCCGGAATCCTCTAATCTCCTACCGGAATGGAACGACACGCGCTCCCGTCTTG 1075
|||||||| ||||||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 1193 CTCCCACGTCGGAATCATCCAATATCGTACCGGAATGGAACGACACGCGCTCCCGTCTTG 1252
Query 1076 CACAAAGCCTAGCAATCAAGGCGCGTCGAGGATTCATTCACGCGCCGCCGGAGAATTCTG 1135
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1253 CACAAAGCCTAGCAATCAAGGCGCGTCGAGGATTCATTCACGCGCTGCCGGAGAATTCTG 1312
Query 1136 ACAAAGTCATTGTGCTTCTGAATACACAAAACGAAGTCAACGGGTACAGACGTTGGTCGG 1195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1313 ACAAAGTCATTGTGCTTCTGAATACACAAAACGAAGTCAACGGATACAGACGTTGGTCGG 1372
Query 1196 TCAACAACGTTTCCTATCACCACCCTAAAACACCGTACCTAATCGCATTAAAGCAGAACC 1255
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1373 TCAACAACGTTTCCTATCACCACCCTAAAACGCCGTACCTAATCGCGTTAAAGCAAAACC 1432
Query 1256 TCACAAACGCGTTCGACTGGCGTTTCACGCCGCCGGAGAATTACGATTCACGGAATTACG 1315
||||||||||||| ||||||||||||||| | |||||||| |||||||| || |||||||
Sbjct 1433 TCACAAACGCGTTTGACTGGCGTTTCACGGCACCGGAGAACTACGATTCTCGAAATTACG 1492
Query 1316 ACATATTCGCGAAACCCCTTAACGCTAACGCGACGACTAGCGATGGAATCTACAGATTGA 1375
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1493 ACATATTCGCGAAACCCCTTAACGCTAACGCGACGACGAGCGATGGAATCTACAGATTGA 1552
Query 1376 GATTCAATTCAACCGTGGACGTGATTTTACAAAACGCGAATACGATGAACCCTAACAACA 1435
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 1553 GATTCAATTCAACCGTGGACGTGATTTTACAAAACGCGAATACAATGAACGCAAACAACA 1612
Query 1436 GCGAAACGCACCCGTGGCATTTACACGGTCATGATTTTTGGGTACTAGGGTATGGAGAAG 1495
| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1613 GTGAAACGCACCCGTGGCATTTACACGGTCATGATTTTTGGGTGCTTGGGTACGGAGAAG 1672
Query 1496 GGAAGTTTAACGAGTCAGAGGATCCGAAAAGGTATAATCGGGTCGACCCGATAATGAAAA 1555
| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1673 GAAAGTTTAATGAGTCGGAGGATCCGAAAAGGTATAACCGGGTCGACCCGATAAAGAAAA 1732
Query 1556 ACACGGTTGCGGTTCAACCGTTTGGCTGGACGGCTTTGCGTTTCAGAGCGGATAATCCTG 1615
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1733 ACACGGTTGCGGTTCAACCGTTTGGCTGGACGGCGTTGCGTTTTAGAGCGGATAATCCTG 1792
Query 1616 GCGTTTGGTCGTTTCACTGTCACATTGAGTCGCATTTTTTCATGGGAATGGGGATTGTGT 1675
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1793 GCGTTTGGTCGTTTCACTGCCACATTGAATCGCATTTTTTCATGGGAATGGGGATTGTGT 1852
Query 1676 TCGAGTCTGGGATTGATAAGGTTTCTAATTTACCTTCTTCTATCATGGGATGTGGTCAGA 1735
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1853 TCGAGTCTGGGATTGATAAGGTTTCTAGTTTACCTTCTTCTATAATGGGATGTGGTCAGA 1912
Query 1736 CTAAACGATGA 1746
||||||| |||
Sbjct 1913 CTAAACGCTGA 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5