BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327944
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39917.1 | Symbols: LCR45 | low-molecular-weight cysteine-ri... 394 2e-109
> AT4G39917.1 | Symbols: LCR45 | low-molecular-weight cysteine-rich
45 | chr4:18515213-18515602 FORWARD LENGTH=249
Length=249
Score = 394 bits (213), Expect = 2e-109
Identities = 237/249 (95%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGATCAAATCTTTAGATGTTATTACTATCGCAATAGTTTTGTTGTTGGTGATT 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGCCAAGATCAAATCTTTAGATGTTATTACTGTCGCAATAATTTTGTTGTTGGTGATT 60
Query 61 GCAGGTCAAGCAACTGCAATTACTGTTCAAGCCGACTGTATTGGACCGTGCAATGACAAT 120
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 GCAGATCAAGCAACTGCAATTACTGTTCAAGCCGATTGTATTGGACCGTGCAATGACGAT 120
Query 121 TGTCAGCAGCTTTGCAAGTCGAAAGGTTATAAAGACTGGACTTGTGCATCATTTAGGACC 180
|| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 121 TGCCAGCAGCTTTGCAAGTCGAAAGGTTACACAGACTGGACTTGTGCATCATTTAGAACC 180
Query 181 AAGTCGAGTTGTTGTTGCAAACCACCGAGACATCCAATATTTGAACAAAATGCTCAATTG 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 AAGTCGAGTTGTTGTTGCAAACCACCGAGACATCAAATCTTTGAACAAAATGCTCAATTG 240
Query 241 AACAGCTAA 249
|||| ||||
Sbjct 241 AACAACTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5