BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327957
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40040.1 | Symbols: | Histone superfamily protein | chr4:18... 579 2e-164
AT4G40030.2 | Symbols: | Histone superfamily protein | chr4:18... 549 1e-155
> AT4G40040.1 | Symbols: | Histone superfamily protein | chr4:18557187-18558743
REVERSE LENGTH=861
Length=861
Score = 579 bits (313), Expect = 2e-164
Identities = 339/352 (96%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACTAAGCAAACAGCTCGTAAATCTACTGGAGGAAAGGCTCCTAGGAAGCAG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 99 ATGGCTCGTACTAAGCAAACAGCTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAG 158
Query 61 CTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCAT 218
Query 121 CGTTACAGGCCTGGAACTGTTGCACTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAG 180
|||||| | || |||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 219 CGTTACCGTCCAGGAACTGTTGCACTACGTGAAATTCGTAAGTACCAGAAGAGTACCGAG 278
Query 181 TTGCTGATCAGGAAGCTCCCATTCCAGAGGCTTGTTCGTGAGATTGCCCAGGATTTCAAG 240
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 279 TTGCTGATCAGGAAGCTCCCTTTCCAGAGGCTAGTTCGTGAGATTGCCCAGGATTTCAAG 338
Query 241 ACTGACCTGCGTTTCCAGAGCCATGCTGTGCTTGCACTCCAGGAGGCTGCTGAAGCGTAC 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 339 ACTGACTTGCGTTTCCAGAGCCATGCTGTGCTTGCACTCCAGGAGGCTGCTGAAGCATAC 398
Query 301 CTTGTGGGTCTCTTTGAGGACACTAACCTCTGTGCCATTCATGCCAAGCGTG 352
|||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 399 CTTGTGGGTCTCTTTGAGGACACTAACCTCTGCGCCATCCATGCCAAGCGTG 450
> AT4G40030.2 | Symbols: | Histone superfamily protein | chr4:18555618-18556878
REVERSE LENGTH=768
Length=768
Score = 549 bits (297), Expect = 1e-155
Identities = 325/339 (96%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 352 GCTGCTCGTAAATCTGCACCAACCACTGGTGGAGTCAAGAAGCCACATCGTTACCGTCCT 411
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 208 GCTGCTCGTAAATCTGCACCAACTACTGGTGGAGTCAAGAAACCACATCGTTACCGTCCT 267
Query 412 GGAACCGTCGCTCTCCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGTTGCTGATCAGG 471
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 268 GGAACTGTTGCTCTCCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGTTGCTTATCAGG 327
Query 472 AAGCTGCCATTTCAGAGGCTAGTCCGTGAGATTGCTCAAGATTTCAAGACTGATTTGCGT 531
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AAACTGCCATTTCAGAGGCTAGTCCGTGAGATTGCTCAAGATTTCAAGACTGATTTGCGT 387
Query 532 TTCCAGAGCCATGCTGTCTTAGCTCTCCAGGAAGCTGCTGAAGCATATCTTGTTGGTCTC 591
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 388 TTCCAGAGCCATGCTGTCTTAGCTCTCCAGGAAGCTGCAGAAGCATATCTTGTTGGTCTC 447
Query 592 TTTGAAGACACTAACCTTTGTGCCATTCATGCCAAGCGTGTCACTATCATGCCTAAGGAT 651
||||||||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 448 TTTGAAGACACTAACCTTTGTGCCATTCATGCCAAGCGTGTGACCATAATGCCCAAAGAC 507
Query 652 ATTCAGCTAGCTCGTCGTATCAGAGGTGAACGCGCTTAA 690
|||||||| ||||||||||||||||||||||||||||||
Sbjct 508 ATTCAGCTCGCTCGTCGTATCAGAGGTGAACGCGCTTAA 546
Score = 429 bits (232), Expect = 2e-119
Identities = 314/354 (89%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACTAAGCAAACAGCTCGTAAATCTACTGGAGG-AAAGGCTCCTAGGAAGCA 59
||||||||||| |||||||| |||||||| || || ||||| ||| ||||| ||||||||
Sbjct 136 ATGGCTCGTACCAAGCAAACCGCTCGTAAGTCCACCGGAGGTAAA-GCTCCAAGGAAGCA 194
Query 60 GCTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCA 119
|||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct 195 ACTTGCTACTAAGGCTGCTCGTAAATCTGCACCAACTACTGGTGGAGTCAAGAAACCACA 254
Query 120 TCGTTACAGGCCTGGAACTGTTGCACTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGA 179
||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 255 TCGTTACCGTCCTGGAACTGTTGCTCTCCGTGAAATCCGTAAGTACCAGAAGAGTACTGA 314
Query 180 GTTGCTGATCAGGAAGCTCCCATTCCAGAGGCTTGTTCGTGAGATTGCCCAGGATTTCAA 239
|||||| |||||||| || ||||| |||||||| || ||||||||||| || ||||||||
Sbjct 315 GTTGCTTATCAGGAAACTGCCATTTCAGAGGCTAGTCCGTGAGATTGCTCAAGATTTCAA 374
Query 240 GACTGACCTGCGTTTCCAGAGCCATGCTGTGCTT-GCACTCCAGGAGGCTGCTGAAGCGT 298
|||||| |||||||||||||||||||||| ||| || |||||||| ||||| ||||| |
Sbjct 375 GACTGATTTGCGTTTCCAGAGCCATGCTGT-CTTAGCTCTCCAGGAAGCTGCAGAAGCAT 433
Query 299 ACCTTGTGGGTCTCTTTGAGGACACTAACCTCTGTGCCATTCATGCCAAGCGTG 352
| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 434 ATCTTGTTGGTCTCTTTGAAGACACTAACCTTTGTGCCATTCATGCCAAGCGTG 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5