BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328000
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37720.1 | Symbols: ATPSK6, PSK6 | phytosulfokine 6 precurso... 403 4e-112
> AT4G37720.1 | Symbols: ATPSK6, PSK6 | phytosulfokine 6 precursor
| chr4:17718961-17719318 REVERSE LENGTH=264
Length=264
Score = 403 bits (218), Expect = 4e-112
Identities = 249/264 (94%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAATCTCTCCAGTTT-ACTCACGACAGCTCTCCTCCTTTGCACCGCCATGCTAAC 59
|||||||||||||| | ||| | |||||| |||||||||||||||| || ||||||||||
Sbjct 1 ATGGCAAATCTCTCTACTTTGA-TCACGATAGCTCTCCTCCTTTGCGCCACCATGCTAAC 59
Query 60 GTGCACCGCCCGCCCGGAACCTGCCTACTTCGCCTCCTTCACAACCTCTCCGGCGGATAC 119
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGCAGCGCCCGCCCTGAACCTGCCTACTTCGCCTCCTTCACAACCTCTCCGGCGGATAC 119
Query 120 ACTTAGTCTGGAAATGATAGAATCAAAACTACATGACGTGGCGGGAGAGAGCTGCGATAA 179
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 120 ACTTAGTCTGGAAATGATAGAATCAAAATTACATGAGGTGGCGGGAGAGAGCTGCGATAA 179
Query 180 AGAAGACGACGAAGATTGCTTGGTGAGAAGAACATTGACGGCTCATCTTGATTATATCTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAGACGACGAAGATTGCTTGGTGAGAAGAACATTGACGGCTCATCTTGATTATATCTA 239
Query 240 TACACAGAAGAATAGTCACCATTA 263
||||| ||||||| ||| |||||
Sbjct 240 CACACATAAGAATAATCATCATTA 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5