BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328011

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37608.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   416    5e-116


> AT4G37608.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 22 Blast hits 
to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:17668951-17670631 FORWARD 
LENGTH=665
Length=665

 Score =  416 bits (225),  Expect = 5e-116
 Identities = 251/264 (95%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  1    ATGGAACCGCAACATACCGATGATGTGTTAAAGCATTTGGAGAAACAGAAGGAATTACTC  60
            ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||
Sbjct  200  ATGGAACCGCAACATACCGATGATGTGTTGAAGCATTTGGAGAAACAGACTGAATTACTC  259

Query  61   AAAGAAGCTCATCAGACCATGTTGCAAGAACTCCAAAAACTCGAGGTTGAACATGAGACG  120
            |||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  260  AAAGAAGCTCAAAAGAACATGTTGCAAGAACTCCAAAAACTTGAGGTTGAACATGAGACG  319

Query  121  ATGATGCGTAAACTCTATGAGCTAATGAACACTCATACTTTAAATCAAAAGAAAATGGAG  180
            ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct  320  ATGATGCGTAAACTCTATGAGCTTATGAACACTCATAGTTTAAATAAAAAGAAAATGGAG  379

Query  181  GAAACTCAAAATGTGTTGGAGGGAAGAGAAACAATTGAAGCTTCATCTCAATCAACTGTA  240
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct  380  GAAACTCAAAATGTGTTGGAGGGAAGAGAAACAATTGAAGCTTCATCTCCTTCAACTGTA  439

Query  241  ACTACTGATGATGAAGAACATTGA  264
            |||||| |||||||||||||||||
Sbjct  440  ACTACTAATGATGAAGAACATTGA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5