BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328030
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2959 0.0
> AT4G37380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17572040-17573938 REVERSE LENGTH=1899
Length=1899
Score = 2959 bits (1602), Expect = 0.0
Identities = 1802/1900 (95%), Gaps = 8/1900 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTCACCACTTATCGCAACGTCACTACCGCAGAATC----A--CGCCACCGCA 54
|||||||||||||||||| |||| ||||||||||||||||||| | | ||||||||
Sbjct 1 ATGGCTTCGTCACCACTTCTCGCCACGTCACTACCGCAGAATCAGTTATCCACCACCGCA 60
Query 55 ACCGCCAGCTTCCGCAATCCGCCGCCTGAGAAACTTGCAGTTTTAATCGACGATTCGCAT 114
|||||||| |||||| ||||||||| ||||||||||||||| |||||||| | |||||
Sbjct 61 ACCGCCAGATTCCGCCTTCCGCCGCCAGAGAAACTTGCAGTTCTAATCGACAAATCGCAA 120
Query 115 TCAGTGGATGAAGTGCTCCAAATCCACGCAGCTATTCTCCGTCATAATCTCCTCATCCAC 174
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 TCAGTAGATGAAGTGCTCCAAATCCACGCAGCTATTCTCCGTCATAACCTCCTCCTCCAC 180
Query 175 CCTCGTTACCCAGTTCTTAACCTCAAGCTCCACCGTGCATACGCTTCCCACGGCAAAATT 234
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCGTTACCCAGTTCTAAACCTCAAGCTCCACCGTGCATACGCTTCCCACGGCAAAATT 240
Query 235 CGCCACTCGTTGGCCTTATTTCACCAGACGATCGATCCAGACTTGTTCCTCTTCACCGCC 294
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCACTCGTTGGCTTTATTTCACCAGACGATCGATCCAGACTTGTTCCTCTTCACCGCC 300
Query 295 GCGATCAACACTGCCTCCATTAACGGCCTCAAAGATCAAGCTTTCCTGCTTTATGTTCAA 354
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 301 GCAATCAACACTGCCTCCATTAACGGCCTCAAAGACCAAGCCTTCCTGCTTTATGTTCAA 360
Query 355 TTGCTTTCTTCTCAAATCAACCCCAATGAGTTTACTTTCTCGTCGATTTTGAAATCTTGC 414
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TTGCTTTCTTCTGAAATCAACCCCAATGAGTTTACTTTCTCGTCGCTTTTGAAATCTTGC 420
Query 415 TCAACTAAGTCCGGAAAATTGATCCATACCCATGTTCTTAAATTCGGATTGGGGCTTGAT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TCAACTAAGTCCGGAAAATTGATCCATACCCATGTTCTTAAATTCGGATTGGGGATTGAT 480
Query 475 CCGTATGTGGCAACTGGTCTCGTCGACATTTATGCGAAAGGAGGAGATGTGGTATCTGCC 534
|| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 CCTTACGTGGCGACTGGTCTCGTCGACGTTTATGCGAAAGGAGGAGATGTGGTATCTGCC 540
Query 535 CAGAAGGTGTTCGATAGAATGCCTGAGAGAAGTCTCGTTTCTTCTACAGCTATGATCACT 594
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 CAGAAAGTGTTCGATAGAATGCCTGAGAGGAGTCTCGTTTCTTCTACAGCTATGATCACC 600
Query 595 TGCTATGCAAAGCAGGGGAACGTTGAGGCTGCGAGAGCTTTGTTCGATAGAATGTGTGAG 654
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 601 TGCTACGCAAAGCAGGGGAACGTCGAGGCTGCGAGAGCTTTGTTCGATAGTATGTGTGAG 660
Query 655 AGAGACATTGTTTCTTGGAACGTGATGATTGATGGATACTCTCAACATGGGTTCCCTAGT 714
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 661 AGAGACATTGTTTCTTGGAACGTGATGATTGATGGATACGCTCAACATGGGTTCCCTAAT 720
Query 715 GACGCTCTGATGCTTTTTCAGAAACTTTTGGCGGATGGTAAACCGAAACCTGATGAAATA 774
|||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 721 GACGCTCTGATGCTATTTCAGAAACTTTTGGCCGAAGGTAAACCAAAACCTGATGAAATA 780
Query 775 ACCGTTGTAGCTGCTCTTTCAGCTTGTTCGCAGATTGGAGCGCTTGAAACTGGGCGATGG 834
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 781 ACCGTTGTAGCTGCTCTTTCAGCGTGTTCGCAGATTGGAGCGCTGGAAACTGGGCGTTGG 840
Query 835 ATCCATGTTTTTGTCAATAGCAGTCGCATTAGGCTCAATGTTAAAGTGTGTACGGCTCTG 894
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| | ||
Sbjct 841 ATCCATGTTTTTGTCAAGAGCAGTCGTATTAGGCTCAATGTTAAAGTATGTACGGGTTTG 900
Query 895 ATTGATATGTATAGCAAATGTGGGAGCTTGGAAGAGGCAGTTTTAGTGTTTAACGATACT 954
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 901 ATTGATATGTATAGCAAATGTGGGAGTTTGGAAGAGGCAGTTTTAGTTTTTAACGATACT 960
Query 955 CCTAGGAAGGATATCGTTGCGTGGAATGCGATGATTACTGGTTACGCAATGCACGGTTAT 1014
|| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 961 CCAAGGAAGGATATCGTGGCGTGGAATGCGATGATTGCTGGTTATGCAATGCACGGTTAT 1020
Query 1015 AGCCAAGACGCGTTGAGATTGTTTGATGAGATGCAGGGGATCACAGGGTTGCAACCAACA 1074
|||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1021 AGCCAAGATGCATTGAGATTGTTTAATGAGATGCAAGGGATCACAGGGTTGCAACCAACG 1080
Query 1075 GATATAACTTTCATAGGAACACTTCAGGCTTGTGCTCATGCTGGTTTGGTAAACGAAGGG 1134
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1081 GATATAACTTTCATAGGAACACTTCAGGCTTGTGCTCACGCTGGTTTAGTAAACGAAGGG 1140
Query 1135 ATACA-AATCTTTGAGTCAATGGGGCAAGAGTATGGGATTAAATCCAAGATCGAGCATTA 1193
||| | |||||||||||||||||| |||||||||||||||||| ||||||| || |||||
Sbjct 1141 ATA-AGAATCTTTGAGTCAATGGGACAAGAGTATGGGATTAAACCCAAGATTGAACATTA 1199
Query 1194 TGGATGCTTAGTTAGTCTGCTCGGTCGTGCTGGCCAGTTAAAACGGGCTTACGAAATCAT 1253
||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 TGGATGCTTGGTCAGTCTACTCGGTCGTGCTGGCCAGTTAAAACGGGCTTACGAAACCAT 1259
Query 1254 AAAAAACATGAACATGGAGGCTGATTCTGTCTTATGGAGTTCTGTTCTCGGAAGCTGTAA 1313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAAAAACATGAACATGGATGCTGATTCTGTCTTATGGAGTTCTGTTCTCGGAAGCTGTAA 1319
Query 1314 ACTTCATGGAGAATTTATGTTAGGCAAGGAAATTGCAGAGTATCTTATTGGACAAAACAT 1373
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1320 ACTTCATGGAGATTTTGTGTTAGGCAAGGAAATTGCAGAGTATCTCATTGGACTAAACAT 1379
Query 1374 CTCAAACTCAGGAATTTATGTTCTTCTTTCGAACATATATGCATTGGTGGCTGATTATGA 1433
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1380 CAAAAACTCAGGAATTTATGTTCTTCTTTCGAACATATATGCATCGGTGGGTGATTATGA 1439
Query 1434 AGGTGTTGCAAAAGTGAGGAACTTGATGAAGGAGAAAGGAATAGTGAAGGAGCCCGGTAT 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1440 AGGTGTTGCAAAAGTGAGGAACTTGATGAAGGAGAAAGGAATAGTGAAGGAGCCTGGTAT 1499
Query 1494 AAGCACCATAGAAATTGAAAACAAAGTTCATGAATTCCGAGCTGGAGATAGAGAACACTT 1553
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGCACCATAGAAATCGAAAACAAAGTTCATGAATTCCGAGCTGGAGATAGAGAACACTC 1559
Query 1554 GAAAAGCAAAGAAATTTACACAATGCTAAGAAAGATCAGTGAGCGGATCAAGTCTCACGG 1613
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1560 GAAAAGCAAAGAAATTTACACAATGCTAAGAAAGATCAGCGAGCGGATCAAGTCTCATGG 1619
Query 1614 TTATGTTCCAAATACAAACACAGTCTTGCATGATCTGGAAGAGACAGAGAAAGAGCAATC 1673
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1620 TTATGTTCCAAATACAAACACAGTCTTGCAGGATCTTGAAGAGACAGAGAAAGAGCAATC 1679
Query 1674 TCTACAAGTTCACAGCGAGAGACTCGCGATTGCATACGGTCTAATCAGTACCAAACCGGG 1733
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1680 TCTACAAGTTCACAGCGAGAGACTCGCGATTGCATACGGTCTAATCAGCACCAAACCGGG 1739
Query 1734 AAGTCCCTTGAAAATATTCAAGAACCTACGAGTGTGTTCGGATTGTCATACGGTGACAAA 1793
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1740 AAGTCCCTTGAAAATATTCAAGAACCTACGAGTATGTTCTGATTGTCATACGGTGACAAA 1799
Query 1794 ACTGATATCGAAAATCACAGGACGGAAAATCGTCATGAGAGATCGGAATAGGTTCCATCA 1853
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1800 ACTGATATCGAAAATCACAGGACGGAAAATCGTTATGAGAGATCGGAATAGGTTCCATCA 1859
Query 1854 TTTCTCAGATGGCTCTTGCTCTTGTGACGATTTCTGGTAA 1893
|||| ||||||| ||||||||||||| |||||||||||||
Sbjct 1860 TTTCACAGATGGTTCTTGCTCTTGTGGCGATTTCTGGTAA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5