BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328051
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36945.1 | Symbols: | PLC-like phosphodiesterases superfami... 1755 0.0
AT4G36950.1 | Symbols: MAPKKK21 | mitogen-activated protein kin... 1487 0.0
AT4G36940.1 | Symbols: NAPRT1 | nicotinate phosphoribosyltransf... 244 2e-63
> AT4G36945.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr4:17419918-17422130 REVERSE LENGTH=1490
Length=1490
Score = 1755 bits (950), Expect = 0.0
Identities = 1055/1107 (95%), Gaps = 2/1107 (0%)
Strand=Plus/Plus
Query 1033 GGAGAAACATGTAGTTCGAGCAGCCAATGCGACGCCGGATTGAGTTGCCAGAGTTGTCCA 1092
||||||||||||||||||| |||| ||||||||||||||||||| || || ||||||||
Sbjct 159 GGAGAAACATGTAGTTCGACCAGCGAATGCGACGCCGGATTGAGCTGTCAAAGTTGTCCG 218
Query 1093 GCGAATGGAAATACCGGGTCTACTTGTACCCGGATCCAACCTCTTAACCCGACTTCAAAG 1152
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCGAATGGAAATACCGGCTCTACTTGTACCCGGATCCAACCTCTTAACCCGACTTCAAAG 278
Query 1153 GTGAATGGTTTGCCGTTTAACAAGTACTCGTGGCTAACCACACACAATTCGTACGCAATC 1212
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 279 GTGAATGGTTTGCCGTTTAACAAGTACTCGTGGCTAACAACACACAATTCGTACGCAATC 338
Query 1213 ACGGGGGCAAATTCGGCAACTGGCTCATTCCTTATCTCTCCAACGAATCAAGAAGACTCC 1272
||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct 339 ACGGGGGCAAATTCGGCAACTGGTTCATTCCTTGTCTCTCCAAAGAATCAAGAAGACTCC 398
Query 1273 ATCACTAATCAGCTTAAGAATGGTGTGAGAGGGATAATGCTAGATACATATGATTTTCAA 1332
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 399 ATCACCAATCAGCTTAAGAATGGTGTGAGAGGTATAATGCTAGATACATATGATTTTCAA 458
Query 1333 GACGATATATGGTTGTGTCATTCCACTGGAGGGACTTGCTTTAACTTCACAGCCTTTCAA 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AACGATATATGGTTGTGTCATTCCACTGGAGGGACTTGCTTTAACTTCACAGCCTTTCAA 518
Query 1393 CCAGCTATCAATGCACTCAAAGAGATCAATGATTTTCTTGAATCAAACTTGTCTGAGATT 1452
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCAGCTATCAATGCACTTAAAGAGATCAATGATTTTCTTGAATCAAACTTGTCTGAGATT 578
Query 1453 GTTACTATCATTCTTGAAGATTATGTCAAATCTCCAATGGGATTGACTAAGGTGTTCAAT 1512
||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 579 GTTACTATCATACTTGAAGATTATGTCAAATCTCAAATGGGATTGACTAATGTATTCAAT 638
Query 1513 GCATCTGGATTGAGTAAGTTCCAGTTACCAATTTCGAGAATGCCGAAAGACGGTACAGAC 1572
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 639 GCATCTGGATTGAGTAAGTTCTTGTTACCAATCTCGAGAATGCCGAAAGACGGTACAGAC 698
Query 1573 TGGCCAACGGTTGATGATATGGTGAAGCAGAACCAAAGGCTTGTTGTTTTTACTTCCAAC 1632
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 699 TGGCCAACGGTTGATGATATGGTGAAGCAGAACCAAAGGCTTGTGGTTTTTACTTCCAAG 758
Query 1633 AAGGATAAAGAGGCTTCTGAAGGTTTTGCTTACCAGTGGAATTACATGGTTGAAAATCAG 1692
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 759 AAGGATAAAGAAGCTTCTGAAGGTCTTGCTTACCAGTGGAATTACATGGTTGAAAATCAA 818
Query 1693 TTTGGCAATGATGGATTGAAGGATGGATCATGCTCGAGTCGATCTGAATCTTCTCCATTG 1752
| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 819 TATGGTAATGATGGAATGAAGGATGGATCATGCTCGAGTCGATCTGAATCTTCTTCACTA 878
Query 1753 GATACCAAGTCTCGGTCTTTGGTTTTTCAGAACTATTTTGAAACCAATCCGAATTCAACG 1812
||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 879 GATACCATGTCTCGGTCTTTGGTGTTTCAGAACTACTTTGAAACCAGTCCGAATTCAACG 938
Query 1813 CAAGCGTGTGCGGATAATTCCTCTCCGTTGATCGAAATGATGAGAACTTGCCATGAAGCA 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CAAGCGTGTGCGGATAATTCCTCTCCGTTGATCGAAATGATGAGAACTTGCCATGAAGCA 998
Query 1873 GCGGGTAAAAGATGGCCTAACTTCATCGCTGTTGATTTTTACCAGAGGAGTGACAGTGGA 1932
||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 999 GCGGGTAAAAGGTGGCCTAACTTCATAGCTGTTGATTTTTATCAGAGGAGTGATAGTGGA 1058
Query 1933 GGAGCTGCCGAAGCTGTAGATGAAGCAAACGGTCGTCTCACATGTGGTTGTGACAGCTTA 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GGAGCTGCCGAAGCTGTAGATGAAGCAAACGGTCGTCTCACATGTGGTTGTGACAGCTTA 1118
Query 1993 GTCTTTTGCAAGTCAAACGCACCTTTTGGCACATGTGATGCTCCTCCTCCGAAGTCGGCT 2052
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1119 GTCTATTGCAAGTCAAACGCACCTTTTGGCACTTGTGATGCTCCTCCTCCGAAGTCGTCT 1178
Query 2053 CCATCACCAGTCGCTGGAGGGACAG-ATTCTTCACGGAATTCAAAAAATCTTCCTGCGGG 2111
|||||||||||| | ||||||| || || |||||||||| ||| |||||||||||||||
Sbjct 1179 CCATCACCAGTCTCCGGAGGGA-AGGATACTTCACGGAAACCAAGAAATCTTCCTGCGGG 1237
Query 2112 TAATGCTGATTCTACAGCTATTGGATT 2138
|||||||||||||||||||||||||||
Sbjct 1238 TAATGCTGATTCTACAGCTATTGGATT 1264
Score = 73.1 bits (39), Expect = 1e-11
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 2139 TGAGATCAGTGGCAAAGCTGATACTATGGTTacacacacaca 2180
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 1449 TGAGATCAGTGGCAAAGCTGATACTATGGTTATACACACACA 1490
> AT4G36950.1 | Symbols: MAPKKK21 | mitogen-activated protein kinase
kinase kinase 21 | chr4:17422572-17423901 REVERSE LENGTH=1330
Length=1330
Score = 1487 bits (805), Expect = 0.0
Identities = 961/1031 (93%), Gaps = 31/1031 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTGGATTCGTAGAGAAACAATTGGTCACGGAAGCTTCTCCACCGTTAGTTTAGCA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 58 ATGGAGTGGATTCGTAGAGAAACGATTGGTCACGGAAGCTTCTCCACCGTTAGTTTAGCA 117
Query 61 ACTACCTCTGGAAGTTGTTCTAAAGCGTTTCCGTCGTTAATGGCTGTGAAATCTTCCGGA 120
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 ACTACCTCTGGAAGTTCTTCTAAAGCGTTTCCATCGTTAATGGCTGTGAAATCTTCCGGA 177
Query 121 GTTGTTTGCTCCGGCGCGTTACGAAACGAGAGAGATGTTCTTGATGATCTTGGTGATTGC 180
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 178 GTTGTTTGCTCCGCCGCGTTACGAAACGAGAGAGATGTTCTTGATGATCTCGGTGACTGT 237
Query 181 TCGGAGATCGTGCGGTGTTTCGGAGAAGGAAGGACGGTGGAGAACGGAGAAGAGATCTAT 240
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 238 TCGGAGATCGTGCGGTGTTTTGGTGAAGGAAGGACGGTGGAGAACGGAGAAGAGATCTAT 297
Query 241 AATCTGTTTCTTGAGTACGCTTCCGGTGGTAATTTAGCTGATCGGATTAAAAACTCCGGC 300
||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 298 AATCTGTTTCTTGAGTATGCTTCCGGTGGTAGTTTAGCTGATCGGATTAAAAGCTCCGGT 357
Query 301 GAAGCGTTGCCGGAGTTTGAAGTGAGGAGATTCACGAGATCGATTGTTAAAGGGTTGTGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 GAAGCGTTGCCGGAGTTTGAAGTGAGGAGATTCACGAGATCGATTGTTAAAGGATTGTGT 417
Query 361 CATATTCATGGTAATGGATATTC--TCATTGTGATTTAAAGCTTGAGAATGTTTTGGATT 418
||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||| ||
Sbjct 418 CATATTCATGGTAATGG-T-TTCACTCATTGTGATATAAAGCTTGAGAATGTTTTGGTTT 475
Query 419 TTGGTGATGGAGATGTGAAGATTTCTGATTTCGGGTTAGCGAAACGGAGGAGTGATGATG 478
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 476 TTGGTGATGGAGATGTGAAGATATCTGATTTCGGGTTAGCGAAACGGAGGAGTGGTGA-G 534
Query 479 AGATTGGTGTTGAGATTAGAGGAACTCCGTTGTATATGGCGCCGGAATCTGTGAATCACG 538
| ||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 535 -GTTTG-TGTTGAGATTAGAGGAACACCGTTGTATATGGCACCGGAGTCTGTGAATCACG 592
Query 539 GCGAGTTTGAATCTCCGGCGGATATTTGGGCTTTAGGATGCTCTGTTGTTGAGATGTCTA 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 593 GCGAGTTTGAATCTCCGGCGGATATTTGGGCTTTGGGATGCTCTGTTGTTGAGATGTCTA 652
Query 599 GTGGCAAAACGGCATGGTGTTTGGAGGATGGTGTTATGAATAATGTTATGTCTTTAATGG 658
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 GTGGTAAAACGGCATGGTGTTTGGAGGATGGTGTTATGAATAATGTTATGTCTTTATTGG 712
Query 659 TTCGTATTGGTTCCGGCGATGAAGTTCCGAGGATTCCGGTGGAGTTGTCGGAGGAAGGTG 718
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 713 TTCGTATTGGTTCCGGCGATGAAGTTCCGAGGATTCCGGTGGAATTGTCGGAGGAAGGTA 772
Query 719 GAGATTTCGTGAGGAAGTGTTTTGTTAAAAACGCGGCGGATAGATGGACGGCTGAGATGC 778
|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 773 AAGATTTCGTGAGCAAGTGTTTTGTTAAAAACGCCGCGGAGAGATGGACGGCTGAGATGC 832
Query 779 TTTTGGATCATCCGTTCTTAGCCGTTGATGGTGATGAGAGTGGGTCATTGAGGTGTGGCG 838
||||||||||||| |||||||||||||||| |||||||||| | ||
Sbjct 833 TTTTGGATCATCCATTCTTAGCCGTTGATG---ATGAGAGTGG--C---GA--------- 875
Query 839 AAGAAGACGAAGCTTGTTCGGTTTCGGTATCACCGAGAAATCCATTTGATTTTCCCGGTT 898
| ||||||||||||||||||||||| | | | ||| ||||||||||||||||||||||
Sbjct 876 A-GAAGACGAAGCTTGTTCGGTTTC---A-C-C-GAGGAATCCATTTGATTTTCCCGGTT 928
Query 899 GGAATTCGGTTCAATCTCCGGTTAATGATTCGGTTATGTTTAATTCTTTGGTACGTTCGC 958
||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 929 GGAATTCGGTTCAATCTCCGGTTAATGATTCGGTTATGTTTGGTTCATTGGTAGGTTCGC 988
Query 959 CGGAGGAGAGGATTAGTGGTTTGGTGAGTGAGAAGGTACCTGATTGGTCGGAGTCGTGTG 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 989 CGGAGGAAAGGATTAGTGGTTTGGTGAGTGAGAAGGTACCTGATTGGTCGGTGTCGTGTG 1048
Query 1019 ATTGGGTCAAC 1029
|||||||||||
Sbjct 1049 ATTGGGTCAAC 1059
> AT4G36940.1 | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase
1 | chr4:17416855-17420252 FORWARD LENGTH=2132
Length=2132
Score = 244 bits (132), Expect = 2e-63
Identities = 148/156 (95%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 2139 TGAGATCAGTGGCAAAGCTGATACTATGGTTacacacacacacacacCGAATCAGACAAC 2198
|||||||||||||||||||||||||||||||| |||||||||| || | || ||||||||
Sbjct 1839 TGAGATCAGTGGCAAAGCTGATACTATGGTTATACACACACACTCAACAAACCAGACAAC 1780
Query 2199 CCATATTTGTATATTGTCAATGCAGTTCACCAACAGGAGCTTCGTTGAGCCAGAGGAAGT 2258
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1779 CCATATTTGTAAATTCTCAATGCAGTTCACCGACAGGAGCTTCGTTGAGCCAGAGGAAGT 1720
Query 2259 GGATGAAGTCATACAACTTGGCGCTGACACTAACCT 2294
||||||||||||||||||||||||||||||||||||
Sbjct 1719 GGATGAAGTCATACAACTTGGCGCTGACACTAACCT 1684
Score = 152 bits (82), Expect = 1e-35
Identities = 101/110 (92%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 2030 ATGCTCCTCCTCCGAAGTCGGCTCCATCACCAGTCGCTGGAGGGACA-GATTCTTCACGG 2088
|||||||||||||||||||| |||||||||||||| | ||||||| | ||| ||||||||
Sbjct 2132 ATGCTCCTCCTCCGAAGTCGTCTCCATCACCAGTCTCCGGAGGGA-AGGATACTTCACGG 2074
Query 2089 AATTCAAAAAATCTTCCTGCGGGTAATGCTGATTCTACAGCTATTGGATT 2138
|| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AAACCAAGAAATCTTCCTGCGGGTAATGCTGATTCTACAGCTATTGGATT 2024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117368874210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5